Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00085 ATGAACAACGTCAACTTTGAAGCTACCCCTCTACTTTTCAAGCCCCAAATAATGTGTCATGCAGGAGAGGCATTTGGATTTTCAAACGAAACCCTAACTTGCTGTGGCTCCAACTTCCTCGTATCTCCAGTACAATCGCACCTTCACTTTTCTCCATTTTCGCTACAATATGAAGAAGAGATCAAAGCGCCCGCAAGTGAAACTGACATGTCTCCTGTACTGGATGGTATTGCTGCTGTGGTTGGTCAGCACGTATTATTTGGAGGGAAATATACAATATCAGGCGGTGACGCCAACTTCATCAACAGTGCTAGGTCCATGGCAAAGCCAGTCCTGAATTTCCAGTCAGATCATAGAATTGCACAACAGGTGAAGGGCAGGAGTGAAAACCTTACAGTGGAGAAGAGCTACAGAGGAGTGAGGAAGAGGCCATGGGGGAGGTGGTCAGCTGAGATACGTGATAGAATTGGTCGATGCCGACACTGGTTGGGAACATTTGACACAGCTGAGGAGGCGGCACGAGCTTATGATGCAGCTGCAAGGCGGTTGAGGGGTTCAAAAGCTAAGACAAACTTTGAGATACCATCAGTGCTACCCCTCTCTTCACCTTCTACTTCTTCATCCTCAGATGTCAAAAAGGTGAGGGGCAGTAATTATAGGAAGTCTAAAATTGTCAAAAATGGTAGAAAATGCTCAGTTGTCAGCTCCATAGCTCAGTTAATAACTGTGGTGCCTGATGATCGAAGTAGAAGTCTTATGAGCAGTAAGCAAAGGAATGGGTCTGGGAATGTGGAGCTAGATTTGAAACTGGGTATGAACTTCAATTGTAAAAGCAGTTCTGGTGTTGCATCAATGGCTGTTTAA 864 0.4525 MNNVNFEATPLLFKPQIMCHAGEAFGFSNETLTCCGSNFLVSPVQSHLHFSPFSLQYEEEIKAPASETDMSPVLDGIAAVVGQHVLFGGKYTISGGDANFINSARSMAKPVLNFQSDHRIAQQVKGRSENLTVEKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKAKTNFEIPSVLPLSSPSTSSSSDVKKVRGSNYRKSKIVKNGRKCSVVSSIAQLITVVPDDRSRSLMSSKQRNGSGNVELDLKLGMNFNCKSSSGVASMAV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00085 287 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Pte6g00085 287 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Pte6g00085 287 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700|GO:0006355
Pte6g00085 287 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
Pte6g00085 287 FunFam Ethylene-responsive transcription factor 2 135 194 - -
Pte6g00085 287 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Pte6g00085 287 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Pte6g00085 287 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 117 246 - -
Pte6g00085 287 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Pte6g00085 287 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00085 Pte-Chr6 761601 762464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00085 23 199 AP2-EREBP Transcription Factor Family AT1G80580 45.604 2.37e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte6g00085 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00085 - - cave:132188012 210.305