Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00082 ATGGCTAGACCCCAACAACGATATCGCGGAGTCCGGCAGAGGCATTGGGGATCTTGGGTTTCTGAAATTCGTCACCCTCTTCTGAAAACGAGAATTTGGTTAGGCACATTTGAAACCGCAGAGGATGCGGCAAGAGCTTATGACGAAGCAGCAAGGCTGATGTGTGGTCCAAAAGCACGTACCAATTTCCCATACAATCCTAATGAAGCTCAATCATCTTCATCAAAATTTCTTTCAGCAACTTTAACAGCCAAGCTGCACAAGTGTCACATGGCTTCACTATCTCTTCAAATGACCAAAAAACCAACGACCAAAGAGCCGCAAGGAGCAGTTCCGTACAGGAGGAGCTCTTGTGCAAACTCTGGCAATGCCATTACTGGAACAAGTGCTGAGACGGGTTTCAGGTGGCCAGAAAAAGGACATGATGAATTACAATGGCCTGAGGTGAATTGGGTTGGTGAGGAAAGAGAGCATGAAATCGTACACCAGGAATTTCAGCCACTTGAAGATGATCATATTGAGCAAATGATACAAGAGTTGCTTCATTACGGCTCTATTGAACTTTGCTGTAATGTCTCAGCTTAG 585 0.453 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEAQSSSSKFLSATLTAKLHKCHMASLSLQMTKKPTTKEPQGAVPYRRSSCANSGNAITGTSAETGFRWPEKGHDELQWPEVNWVGEEREHEIVHQEFQPLEDDHIEQMIQELLHYGSIELCCNVSA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00082 194 MobiDBLite consensus disorder prediction 101 133 - -
Pte6g00082 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pte6g00082 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 104 - -
Pte6g00082 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pte6g00082 194 MobiDBLite consensus disorder prediction 114 130 - -
Pte6g00082 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pte6g00082 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pte6g00082 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pte6g00082 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pte6g00082 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pte6g00082 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Pte6g00082 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00082 Pte-Chr6 714975 716062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00082 1 189 AP2-EREBP Transcription Factor Family AT5G25190 62.963 1.92e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g00082 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00082 - - qsa:O6P43_017963 286.96