Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00060 ATGACAAAGAAATCACAGAAGCACAGTTCAAGCAGCGACGCCAGCAGCACCTCCGACAACACACCAAAAACAGTCACCAAGCCCAGGACCCGGAAAAACACTCCGCGACGTGCTCCTCAACGACGCAGCTCAATCTACCGCGGCGTCACAAGGCATCGTTGGACAGGTAGATACGAGGCTCACTTGTGGGACAAAGATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTGTATCTTGGGGCTTATGGGGATGAAGAAGCTGCAGCACATGCATATGACTTGGCTGCATTGAAGTACTGGGGCCAAGCCACCATCCTTAATTTTCCGTTATCGACATACGAAGAGGAGATCAAAGAGATGGAGGGTCAATCAAGAGAAGAGTACATTGGATCTTTAAGAAGGAGAAGTAGTGGGTTCTCTAGAGGGGTCTCCAAGTACAGAGGTGTGGCAAGACACCATCACAATGGGCGGTGGGAAGCTCGGATTGGAAGAGTATTTGGCAACAAATATCTTTATCTTGGAACATACGCTACTCAAGAAGAAGCAGCTATAGCATATGACATGGCGGCCATAGAGTACCGAGGGCTCAATGCTGTGACAAACTTTGACCTCAGCCGTTACATAAAATGGCTACATCCTAAGAACCAAGACCACTCCGTTGACCCCATCATTGAATATTCAAACCCTCATGGTGACACTTCTCAATTAGTAAACCCAAATGATCATGAAGTTGATCTAGGATTTGGTCTCCACCACTCAAGCTCAGAACTCAACAATGACTTGCTGGTTCCACATAGGTCTAGTGATGGTAATGGTGTCTCATCTGCCTTAGAGCTTCTCCAACAGTCACCAAAATTCAAAAGAATGCTAGAAAGGACGTCTGGTTTAGTTGACCATTCTCCTAAAATGAGAGAGTCTGATGACCCTCCACGTCGAACTACATTCCCTGACGACATTCAAACCTTGTTTGATTGTCATGACTCAAGCTGCTATACCCAAAGTGATCATGACAATATTTTTAGTGCTTTCAACTCTTTTGAGGACCCTGTTTTTGATTGTGAGCTCCATGCCTAG 1080 0.4583 MTKKSQKHSSSSDASSTSDNTPKTVTKPRTRKNTPRRAPQRRSSIYRGVTRHRWTGRYEAHLWDKDCWNESQSKKGRQVYLGAYGDEEAAAHAYDLAALKYWGQATILNFPLSTYEEEIKEMEGQSREEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDMAAIEYRGLNAVTNFDLSRYIKWLHPKNQDHSVDPIIEYSNPHGDTSQLVNPNDHEVDLGFGLHHSSSELNNDLLVPHRSSDGNGVSSALELLQQSPKFKRMLERTSGLVDHSPKMRESDDPPRRTTFPDDIQTLFDCHDSSCYTQSDHDNIFSAFNSFEDPVFDCELHA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00060 359 MobiDBLite consensus disorder prediction 298 316 - -
Pte6g00060 359 SUPERFAMILY DNA-binding domain 44 113 IPR016177 GO:0003677
Pte6g00060 359 Gene3D AP2/ERF domain 45 114 IPR036955 GO:0003700|GO:0006355
Pte6g00060 359 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Pte6g00060 359 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Pte6g00060 359 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 231 - -
Pte6g00060 359 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 MobiDBLite consensus disorder prediction 7 28 - -
Pte6g00060 359 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Pte6g00060 359 MobiDBLite consensus disorder prediction 298 317 - -
Pte6g00060 359 MobiDBLite consensus disorder prediction 1 45 - -
Pte6g00060 359 FunFam AP2-like ethylene-responsive transcription factor 44 113 - -
Pte6g00060 359 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00060 Pte-Chr6 519738 523348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00060 135 217 AP2-EREBP Transcription Factor Family AT1G72570 37.363 1.27e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte6g00060 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00060 K09285 - pop:18097139 447.588