Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00048 ATGGTCCGGATTTGTTCAAAGTTTGATGCTTTGTGTGAATTTTTTCATATCTCAGTTTCCCTTTCGATGGGAGCTATTGAAGAGAAACCTTGCCTTGCTGCTGATGAAGAAATTCCTTTTAGCTCTTCGCAATCTGGAAGAAAAGTCCAATCTTTTGATTTTGAGACAAATAATGTGCTTACACGATCAAATTCAGGAAGTTCATGGATTTTAAAGCAAATAAGAATAAGGCCAATCAGAAGCATATATATTGTATTAATAAAGGCAAAGATCAATGTCTTGCTGCCGTTTGGTCCCTTGGCGATCTTGTGCCACTACCTAACTGGAAAGCATGGATGGGTCTTTTTCTTTAGCTTATTGGGCATAACTCCATTGGCAGAGCGTTTGGGATTTGCTACTGAGCAGCTTGCATTCTATACAGGACCTACAGTCGGCGGTCTCCTAAACGCAACTTTCGGCAATGCAACAGAAATGATTATATCTATATATGCATTGGAAAATGGCATGATTAGAGTTGTTCAGCAATCACTTCTTGGTTCCATCTTGTCAAATATGCTTTTAGTTCTTGGATTTTCCTTCTTTACTGGGGGCATTGTACACAACAAAAAGGTTCAGGTTTTCAATAAGGCTGCTGCAGTTGTCAATTCTGGATTGCTTTTAATGGCTGTAATGGGGATATTGCTACCAGCTGTTCTTCATTTCACGCGAACCGAAGTTCATTTTGGGAAGTCAGAGTTAGCTCTTTCCAGATTTAGCAGCTGTGTAATGCTAATTGCATATGCTAGCTACCTATTCTTTCAACTAAGATCTCAACAAAATCTTTATAATCCTATTGAAGAGGATGGAGATAGCACAGAACATTCTGATGATGACGAGGTCCCTGAATTGACTCAATGGGAAGCAATAGCCTGGCTTGCAATACTGACAGTGTGGGTATCTGTGTTGTCCGGATACCTTGTTGATGCCATCCAGGGAGCTTCTGACTCATGGAACATGCCAGTGTCTTTCATTAGTGTCATCTTACTGCCAATTGTAGGCAATGCCGCTGAGCATGCAAGTGCTATCATGTTTGCTATGAAGGATAAGCTTGACATAACACTTGGAGTGGCAATTGGATCATCGACGCAGATATCCATGTTTGTGATCCCCTTCTGTGTGGTAGTTGGGTGGTGTATGGGAAAAGAAATGGACTTGAACTTTCAACTCTTTGAGACTGCCACACTTTTCATCACTGTACTGGTAGTTGCATTTATGCTACAGGAAGGAACCTCGAATTATTTCAAGGGATTGATGCTTATTCTATGCTATCTTATAGTGGCCGCAAGCTTTTTTGTGCATGTCGACCTTACTAATGGTGAGTAA 1362 0.4075 MVRICSKFDALCEFFHISVSLSMGAIEEKPCLAADEEIPFSSSQSGRKVQSFDFETNNVLTRSNSGSSWILKQIRIRPIRSIYIVLIKAKINVLLPFGPLAILCHYLTGKHGWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMIISIYALENGMIRVVQQSLLGSILSNMLLVLGFSFFTGGIVHNKKVQVFNKAAAVVNSGLLLMAVMGILLPAVLHFTRTEVHFGKSELALSRFSSCVMLIAYASYLFFQLRSQQNLYNPIEEDGDSTEHSDDDEVPELTQWEAIAWLAILTVWVSVLSGYLVDAIQGASDSWNMPVSFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDLTNGE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00048 453 Gene3D - 142 281 IPR044880 -
Pte6g00048 453 Gene3D - 288 445 IPR044880 -
Pte6g00048 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 63 447 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pte6g00048 453 Pfam Sodium/calcium exchanger protein 302 441 IPR004837 GO:0016020|GO:0055085
Pte6g00048 453 Pfam Sodium/calcium exchanger protein 113 268 IPR004837 GO:0016020|GO:0055085
Pte6g00048 453 FunFam Vacuolar cation/proton exchanger 289 445 - -
Pte6g00048 453 NCBIfam calcium/proton exchanger 94 444 IPR004798 GO:0006816|GO:0015369
Pte6g00048 453 FunFam Vacuolar cation/proton exchanger 142 281 - -
Pte6g00048 453 NCBIfam calcium/proton exchanger 85 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00048 Pte-Chr6 431958 438137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00048 5 448 Antiporters AT1G55730 66.518 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00048 K07300 - qsa:O6P43_017901 709.523