Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00037 ATGGGTGAAGAGGCCAAGGTAACTATTCCTGAGTCTGTTTTGAAGAAGCGTAAGAGGGAAGAAGAGTGGGCACTGGCCAAAAAGCAGGAGCTTGAGGCTACAAAGAAGAAGAATCTTGAGAATCGCAAGATCATTTACAAAAGAGCCAAGCAATATGCCAAGGAGTATGAAGACCAGGAAAAGGAACTGATCAGATTGAAGCGTGAGGCCAAATTGAAGGGAGGGTTTTATGTTGATCCAGAGGCCAAGCTCTTGTTTATAATTCGTATCCGAGGTATCAATGCCATCGATCCAAAGACCAAAAAGATCTTGCAGCTTTTGCGTTTGAGGCAGATTTTCAATGGTGTGTTCTTGAAAGTAAACAAAGCAACAATGAATATGCTTCACAGGGTTGAGCCTTATGTGACCTATGGTTATCCGAATCTGAAGAGTGTTAGAGAACTGATTTACAAGAGAGGATTTGGAAAGCTGGACAAACAGCGGATTGCTTTGACTGATAACTCTGTTATCGAGCGGCATAATATACAGGCCCTCGGCAAGTATGGCATTATTTGCACGGAGGATCTTATTCATGAGATCATGACAGTGGGACCTCACTTCAAGGAGGCAAACAACTTTCTCTGGCCTTTTAAGTTGAAGGCACCCCTGGGTGGTCTTAAGAAGAAGAGGAATCACTATGTTGAAGGAGGAGATGCTGGCAACCGTGAGAATTATATTAATGAACTCATCAGAAGAATGAATTAG 744 0.4274 MGEEAKVTIPESVLKKRKREEEWALAKKQELEATKKKNLENRKIIYKRAKQYAKEYEDQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGFGKLDKQRIALTDNSVIERHNIQALGKYGIICTEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00037 247 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Pte6g00037 247 Coils Coil 46 73 - -
Pte6g00037 247 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Pte6g00037 247 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Pte6g00037 247 SUPERFAMILY Ribosomal protein L30p/L7e 84 247 IPR036919 -
Pte6g00037 247 PANTHER 60S RIBOSOMAL PROTEIN L7 7 247 IPR039699 -
Pte6g00037 247 CDD Ribosomal_L7_archeal_euk 84 247 IPR035808 -
Pte6g00037 247 Gene3D - 190 247 IPR036919 -
Pte6g00037 247 Gene3D - 84 189 IPR036919 -
Pte6g00037 247 FunFam 60S ribosomal protein L7 193 247 - -
Pte6g00037 247 FunFam 60S ribosomal protein L7 84 192 - -
Pte6g00037 247 NCBIfam 60S ribosomal protein uL30 10 247 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00037 Pte-Chr6 320798 323577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00037 4 248 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.898 2.25e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00037 K02937 - zju:107428176 437.573