Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00036 ATGGATGGCATTCATGGGGGTGATACTCGAATGCACATGACTGATGCTCAACATCCGATGCATATGCAGTACTTGCAGGGGCATGAACATCATGGGTTGCATCAGATGACCAATGGGACTGCTATGGATGATGATCATAACAGCGTAAGTGCCGGGGGAAGTGAGGGGATGGAAGGGGATATCCCATCCAGTGGTGGAAATCTTCCTGACAACAATACTGCCATAATTGAAGGCAATGACAATGCAGATCAGTTGACATTGTCCTTCCAGGGTCAGGTCTATGTATTTGATTCTGTGTCACCGGAAAAGGTTCAAGCTGTCTTATTACTTTTAGGGGGCCGTGAAATGCCTCCAACTTCAAATGCCGTTCCAATATCCTCTCAACATAGCAACCGGGTTCTTGCTAGTACTCCACAAAAGTACAGTGTTCCTCATAGATTGGCTTCATTAATTAGATTTCGAGAAAAGAGGAAAGAGCGAAACTTTGACAAAAAAATACGTTATACTGTTCGGAAGGAGGTAGCCCTGAGGATGCAAAGAAATAAGGGTCAATTTACATCATCAAAATCTAATCACGATGAATCATCAGCTGCTGCCAACTGGGGATCTAATGAGAACTGGGCATCTGATAGTGGTGGACCTCAACAAGATATTGTTTGTAAGCACTGTGGCATTAGCGAGAAGTGCACACCAATGATGAGACGTGGACCTGAAGGGCCAAGAACACTATGTAATGCATGTGGACTTATGTGGGCAAACAAGGGGACTCTGAGGGACCTCTCCAAAGCAGTACCTCAGGCTGGACAAAACACTGCATCCATTAGAAATGAGTTAAACAATCATGTTGAGAATAAAAGTTTTGAGGCTGAGCAAGTAGCTCTGACAGGGGATATCGGGAACTCGTGA 906 0.447 MDGIHGGDTRMHMTDAQHPMHMQYLQGHEHHGLHQMTNGTAMDDDHNSVSAGGSEGMEGDIPSSGGNLPDNNTAIIEGNDNADQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREMPPTSNAVPISSQHSNRVLASTPQKYSVPHRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESSAAANWGSNENWASDSGGPQQDIVCKHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAVPQAGQNTASIRNELNNHVENKSFEAEQVALTGDIGNS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00036 301 MobiDBLite consensus disorder prediction 34 73 - -
Pte6g00036 301 ProSiteProfiles GATA-type zinc finger domain profile. 214 275 IPR000679 GO:0006355|GO:0043565
Pte6g00036 301 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Pte6g00036 301 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Pte6g00036 301 Pfam tify domain 82 112 IPR010399 -
Pte6g00036 301 Pfam CCT motif 146 188 IPR010402 GO:0005515
Pte6g00036 301 CDD ZnF_GATA 219 262 IPR000679 GO:0006355|GO:0043565
Pte6g00036 301 SMART tify_2 78 113 IPR010399 -
Pte6g00036 301 Pfam GATA zinc finger 220 256 IPR000679 GO:0006355|GO:0043565
Pte6g00036 301 PANTHER GATA TRANSCRIPTION FACTOR 28 18 288 IPR045280 GO:0006355
Pte6g00036 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 265 - -
Pte6g00036 301 Gene3D - 213 275 IPR013088 GO:0006355|GO:0008270
Pte6g00036 301 ProSitePatterns GATA-type zinc finger domain. 220 247 IPR000679 GO:0006355|GO:0043565
Pte6g00036 301 SMART GATA_3 214 267 IPR000679 GO:0006355|GO:0043565
Pte6g00036 301 MobiDBLite consensus disorder prediction 181 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00036 Pte-Chr6 313769 318932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00036 1 301 Tify Gene Family AT1G51600 61.039 3.51e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte6g00036 GATA 4.9e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00036 - - qsa:O6P43_028005 434.876