Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00021 ATGGCGCACCAAGTTCAGATGTCTGAAGAAAAAATCTCTGCAAAGGCTACTCATTTTTTCACTATGATTGTTCCTGAGAATTTGAAGGATGGAAAGCTTATGATTCCCAAAGAGTTTGTGCAGAGATATGGAGACTGTTTAATGGATTTTGCATTTCTGAAGCTTCCAAATGGTGCAGAATGGAAAGTAAGCTTAACGAAATGTAACGGCCAAGTCTGGTTACAAAATGGATGGAAAGAATTTGCAGAATATCACTCTCTAGCCTATGGACAGTTGATGGTTTTTAGATACGAAGGAACTTGCCAATTTCAGGTTCTCATTTTTGACATGAGTGCATTAGAAGTTAACTATCCTTTCAATGATTCCAATAATGAACAATGGACCAATGTGAGCAATGATCAAGGATGCCAAATTGGAGAACCTGAAGGATCTACAGAGAGTGAAGAAAGTGTTGAGAATATTCTCCATGAAGTTCCAACTGGAATGAAAAGAAGAGGGAAGTCATTTGAGTCTTTCCTACATCGTAAGAAGATGAGAATCGATAAAGGTGCTGAAAATAAGAGTTTTCCCAATGTACAGAGCTCGTCCAAAAAGAAGAAGATCAAGAAATCAAAAGTGAACACTGATTCTCGTTCGTCCTTGAGGGAGTTTAAGAAAGCCACGGGTATTGCTCCTACTTTGAATCAATTGAAATCCAAGAAATTCAAGAGGAAAAGTGCTAGGACTTCAAATACAAGGGCTGCAGCTCTTGAAAAAGCATCTGCTTTCAAGTCTGAAAATCCATTCTTCCTGACAGTCATGCAACCAAGCCTTGCTAGCGCAAAATCTTACATCACCGTTCCATACAGGTTTGTTGAGAGATACCTTAATCCAGTGAAGAAGGAAGGAATTGTCATCCTTCGAGTCCCACTGCAGAAAGATTGGCATGTCAAGTACACTGTGAAGTATAGTAAAGCTCACAGGAAAATGAAACTAACTATTGGGAGGAAGGAATTTATTAAAGAGAATAAGTTCAAAGTCGGTGATGTCTGTGTTTTTGAGTTAGTGGAGAAAACGGCAACCGTATTCAAAGTACACATTTTCAGAATAGCAGAAAGTCCAAGTTGTACCTTGTCTCAAGAGACAACTCAAATGACTGGAGGTAATCAAGGTTGGACTAATTGGAGTTTCGAAGTGAAGACAGAAACTACTACAATTGGCAATGTTGGATGCAGCACAACAATTCCAGCAAAAGAGTTGCAACGTTCAGCAAGGAATTCTAGATTTGAATCCAGAGAGTTAAGACAGAATTCTAAAGAAAACTTAGCAGTTGCGCTGCCTATTGATAGATCTTCACATTGGGATTCTTCAGCAGCTGCAGCTTTTACGGCAGCCAGCAAATTTAATTCAGATAATCCTTTCACCATTGTGAACATCCGAGCATCACATCTTGAAAAAGCATTGCCTGTAAGAAAAGCTTTCTTGGAGAGTTGCTTGATACATAGTGGCATGACTGTGATGCTACAAGTTGGGTTCCAAACATGGTCTGTGAAGTTTCTTCTTTATCCGTACAAGTCCACCGCTTGGTTGTCAGCTGGTTGGTCTAAATTTGCAGAAGAAAATCATCTTGAAGCAGGAGATTCCTGTGTTTTGGAGCTGATTAGAAGAGAAGATCCTGTGCTGAAAGTGATTATGTTCAGGAGATGCATGTATTAA 1695 0.3941 MAHQVQMSEEKISAKATHFFTMIVPENLKDGKLMIPKEFVQRYGDCLMDFAFLKLPNGAEWKVSLTKCNGQVWLQNGWKEFAEYHSLAYGQLMVFRYEGTCQFQVLIFDMSALEVNYPFNDSNNEQWTNVSNDQGCQIGEPEGSTESEESVENILHEVPTGMKRRGKSFESFLHRKKMRIDKGAENKSFPNVQSSSKKKKIKKSKVNTDSRSSLREFKKATGIAPTLNQLKSKKFKRKSARTSNTRAAALEKASAFKSENPFFLTVMQPSLASAKSYITVPYRFVERYLNPVKKEGIVILRVPLQKDWHVKYTVKYSKAHRKMKLTIGRKEFIKENKFKVGDVCVFELVEKTATVFKVHIFRIAESPSCTLSQETTQMTGGNQGWTNWSFEVKTETTTIGNVGCSTTIPAKELQRSARNSRFESRELRQNSKENLAVALPIDRSSHWDSSAAAAFTAASKFNSDNPFTIVNIRASHLEKALPVRKAFLESCLIHSGMTVMLQVGFQTWSVKFLLYPYKSTAWLSAGWSKFAEENHLEAGDSCVLELIRREDPVLKVIMFRRCMY* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00021 564 CDD B3_DNA 485 560 IPR003340 GO:0003677
Pte6g00021 564 SMART B3_2 467 562 IPR003340 GO:0003677
Pte6g00021 564 SMART B3_2 19 111 IPR003340 GO:0003677
Pte6g00021 564 SMART B3_2 263 364 IPR003340 GO:0003677
Pte6g00021 564 Gene3D - 11 112 IPR015300 -
Pte6g00021 564 ProSiteProfiles B3 DNA-binding domain profile. 263 364 IPR003340 GO:0003677
Pte6g00021 564 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Pte6g00021 564 Pfam B3 DNA binding domain 21 109 IPR003340 GO:0003677
Pte6g00021 564 Pfam B3 DNA binding domain 263 362 IPR003340 GO:0003677
Pte6g00021 564 Pfam B3 DNA binding domain 469 561 IPR003340 GO:0003677
Pte6g00021 564 Coils Coil 410 430 - -
Pte6g00021 564 Gene3D - 241 365 IPR015300 -
Pte6g00021 564 Gene3D - 448 564 IPR015300 -
Pte6g00021 564 ProSiteProfiles B3 DNA-binding domain profile. 506 562 IPR003340 GO:0003677
Pte6g00021 564 PANTHER B3 DOMAIN-CONTAINING 356 550 - -
Pte6g00021 564 CDD B3_DNA 18 109 IPR003340 GO:0003677
Pte6g00021 564 SUPERFAMILY DNA-binding pseudobarrel domain 461 560 IPR015300 -
Pte6g00021 564 CDD B3_DNA 261 362 IPR003340 GO:0003677
Pte6g00021 564 SUPERFAMILY DNA-binding pseudobarrel domain 256 362 IPR015300 -
Pte6g00021 564 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Pte6g00021 564 MobiDBLite consensus disorder prediction 183 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00021 Pte-Chr6 197060 200199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00021 261 560 B3 DNA Binding Superfamily AT3G18990 25.284 3.05e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte6g00021 B3 8.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00021 - - jre:108998184 290.812