Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00012 ATGGCGACTTATGCGGGTATGAAGCCTACCAAACCCGGTCTTGAAGATCACGAACAGCAAATTCACAAGATTAGAATCACTCTTTCTTCGAAGAATGTCAAAAACCTCGAGAAAGTTTGTACGGATTTGGTTCGTGGTGCTAAGGACAAGAAGCTGAGAGTCAAGGGGCCAGTTAGGATGCCCACGAAGGTGCTTCTCATTACAACCAGGAAGTCACCCTGCGGAGAAGGTACCAATACTTGGGACAGATTTGAGCTCCGTGTGCACAAGAGAGTTATCGACCTCTTTAGTTCTCCAGATGTTGTTAAGCAGATCACCTCTATCACTATCGAGCCTGGTGTGGAGGTTGAGGTTACAATTGCTGAATGA 369 0.4634 MATYAGMKPTKPGLEDHEQQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKKLRVKGPVRMPTKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00012 122 SMART Ribosomal_S10_2 25 119 IPR027486 -
Pte6g00012 122 NCBIfam 30S ribosomal protein S10 22 120 IPR005729 GO:0003735|GO:0006412|GO:0015935
Pte6g00012 122 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte6g00012 122 PRINTS Ribosomal protein S10 family signature 80 94 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte6g00012 122 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte6g00012 122 Gene3D Ribosomal protein S10 domain 8 122 IPR036838 -
Pte6g00012 122 Pfam Ribosomal protein S10p/S20e 25 119 IPR027486 -
Pte6g00012 122 FunFam 40S ribosomal protein S20 8 122 - -
Pte6g00012 122 SUPERFAMILY Ribosomal protein S10 23 120 IPR036838 -
Pte6g00012 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 17 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte6g00012 122 Hamap 30S ribosomal protein S10 [rpsJ]. 21 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00012 Pte-Chr6 115272 116995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00012 4 122 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 90.756 2.91e-75 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00012 K02969 - gmx:100499912 228.409