Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00011 ATGACTTTGATTAAAGCAAATACTATGAGCAGTACTAGCACAATGTTGTCTTGCTCTTTCTATGCCAAACCACGAGACAGCTTAGTTCAAGCTGCAAACAAATCGTTCTTAAAGTTTAATGTTGCTTCCAACAATTCTCTGAGGCTCAGAGCATTTCCGTTTGACTATCCACTTGCTAGCAGAATCATCGTCAGAAATTTATCATATTCCACCAACGAAGCCACTTTGCAGAAAGAATTTGCAAATTTTGGCGAGATAACTGAAGCTAAAATTGTAAAAGATGCTGCAACAAAAAACTCAAAGGGGTATGCTTTCATACAATACACCTCTCAAGATGATGCCATGCATGCTTTAGAATCTATGGATATGACGGATTTTGAAGGACGAATGATTTTCGTAGAAGTAGCAAAACCTGGAATGGGTGATTTTTCAGGAAGATCAAAAACTTCAGGACCCCCAAAAAAATGGCAATTGCCAGATCATGTCGAAGTTCCAGATTGTTGGTATTGA 510 0.3824 MTLIKANTMSSTSTMLSCSFYAKPRDSLVQAANKSFLKFNVASNNSLRLRAFPFDYPLASRIIVRNLSYSTNEATLQKEFANFGEITEAKIVKDAATKNSKGYAFIQYTSQDDAMHALESMDMTDFEGRMIFVEVAKPGMGDFSGRSKTSGPPKKWQLPDHVEVPDCWY* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00011 169 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pte6g00011 169 SUPERFAMILY RNA-binding domain, RBD 59 146 IPR035979 GO:0003676
Pte6g00011 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Pte6g00011 169 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 52 156 - -
Pte6g00011 169 CDD RRM_SF 62 134 - -
Pte6g00011 169 Gene3D - 54 157 IPR012677 -
Pte6g00011 169 SMART rrm1_1 61 134 IPR000504 GO:0003723
Pte6g00011 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00011 Pte-Chr6 108601 112217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00011 60 137 Eukaryotic Initiation Factors Gene Family AT4G34110 34.615 1.14e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00011 - - qsa:O6P43_013392 180.644