Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00007 ATGACTCCATCTAACATGTCTGGACAGTTTGGTGATACCACACACACCAAAGTCTTTGTTGGAGGATTGGCATGGGAGACCCAAAAGGAGACCATGAAGAAATACTTCGAGCAGTTTGGTGAGATCTTGGAAGCTGTTGTCATCACTGATAAGGCTACTGGAAGATCCAAAGGCTATGGATTTGTAACTTTTCGTGAACCAGATGCAGCCATGAGAGCTTGTGTAGATGCTTCTCCAGTGATTGATGGTAGGAGGGCTAACTGTAACCTTGCTTCTCTGGGTATTCAGAGATCCAAGCCATCCACGCCAAAGCATGGTGGAACAGGCAGGAACTTTAGGGTCATGGGTTCTTTTCAGACAGGTTTTGGAGGGGTGGGAACTGCTTTTCCCTCAACAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCCTATAATGTTTATGGGTACTCTCCATACTCCACGGACTACAGTTACCCAATGAGCTACTATGGTATGTATGGAGGAGCAACAGCGCAGTATCCTTTGTATGGAAGTGGACCAGCAGGAGGGATGATGACTGGGGCTGCAGCAGGAACCGCTTACTACCCTTATGTACCGTTTGGAGAAGGCAATGGTGCTGTGACTAATAGTTACACTTCTGGACAAAGTGGCTATGGTGTCAACTATCCGCATCATCTATTTCACTACTCTCCTATGACTTCAACTGCTGGTTATGCACAACACTATAGTGGTGCACCCATGTCTCTTGCCCCTACTCCTCCATTGCAATCAGGCGTGACCACGGCCTTTCAAGCTCCAATTCCTCATCGCTAG 819 0.4762 MTPSNMSGQFGDTTHTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDASPVIDGRRANCNLASLGIQRSKPSTPKHGGTGRNFRVMGSFQTGFGGVGTAFPSTATFPHYAIQQGIPYNVYGYSPYSTDYSYPMSYYGMYGGATAQYPLYGSGPAGGMMTGAAAGTAYYPYVPFGEGNGAVTNSYTSGQSGYGVNYPHHLFHYSPMTSTAGYAQHYSGAPMSLAPTPPLQSGVTTAFQAPIPHR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00007 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pte6g00007 272 PANTHER BOULE-RELATED 2 255 - -
Pte6g00007 272 Gene3D - 2 112 IPR012677 -
Pte6g00007 272 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Pte6g00007 272 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Pte6g00007 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Pte6g00007 272 CDD RRM_RBM24_RBM38_like 16 91 - -
Pte6g00007 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00007 Pte-Chr6 81062 85985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00007 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 3.72e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00007 - - jre:108998860 438.728