Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01686 ATGGGTTCAAAGGCAGATTTGAAACGAAAGCATAAGCAGCAGAAGAAAGCGAAGTCAGGTGGGTTCGAGTCCTTAAACCTTAGTCCTAATGTTTACAGAGGAGTCAGACGCAAAGGTTACAAGGTGCCGACCCCGATTCAGAGGAAAACAATGCCACTAATACTTGATGGCTCAGACGTTGTTGCTATGGCTCGTACTGGGTCTGGAAAAACTGCTGCTTTTCTTGTCCCTATGCTTCAACGTTTGCAGCAACATGCCGCTCAGGCTGGTGTCAGAGCACTCATTTTGTCACCTACTAGAGATTTGGCTATTCAGACTCTTAAGTTTACCAAGGAGCTTGGGCACTTTACTGATCTTCGAGTGAGTTTGTTGGTTGGTGGAGACAGTATGGAAAGCCAATTTGAAGAATTAGCTCAGAATCCGGATATTATAATTGCAACTCCGGGAAGGCTTATGCACCATTTGTGTGAGGTTGAGGATATGTCGTTGAAAACAGTGGAATATGTTGTTTTTGACGAAGCAGACTGTCTTTTCAGTATGGGTTTTGCGGAGCAGTTGCACAAAATTCTTGCACAGCTCGGTGAGAACCGTCAGACATTGCTTTTTAGTGCAACATTACCTAGTGCCCTCGCTGAGTTTGCCAAGGCTGGTTTGAGGGATCCTCATCTTATTCGATTGGATGTGGACACTAAAATAAGTCCCGACTTGAAGCTAGTCTTTTTCACTCTGAGACAGGAAGAGAAGCATGCTGCTTTGCTATATTTGATAAGAGAGCAAATCAGTTCTGATCAGCAGACATTAATATTTGTATCCACTAAACATCACGTAGAGTTTCTCAATATATTGTTCAGAGAAGAGGGACTTGAGCCTTCTGTATGTTATGGCGACATGGATCAAGATGCCCGAAAAATTCATATATCAAGGTTTAGAGCAAGGAAGACAATGTTGTTGATTGTAACAGATGTTGCTGCTCGTGGGATTGATATCCCATTACTTGACAATGTTGTCAACTGGGATTTTCCACCAAAGCCTAAGATATTTGTTCATCGAGTTGGAAGAGCTGCAAGAGCTGGTCGGACTGGTACATCATATTCTTTTCTGACATCAGAGGATATGCCTTATCTGTTAGATCTTCATCTATTCCTTTCAAAACCAATCAAACCTGCTCCAACTGAAGAAGAGGTTTTGCGTGATAAGGATGGAGTCATGTCCAAAATTGAGCAAGCAATTGCAAATGGAGTCACCATTTATGGTCGTTTGCCTCAAGGACTGATCGACCTTGGTTCAGATAGGATGCGGGACATAATTGGTTCTTCTGCTGAATTGAATGCATTGCATAAAACCTGTACGAATGCATTTCGTCTATATTCAAAGACAAAGCCATTGCCTTCAAAAGAGTCAATTAGGAGAGCCAAGGATCTGACTCGTGAAGGTCTACACCCAATATTCCAGAATGTACTTGAGAGTGGTGAGTTATTGGCACTTGCATTCTCTGAGCGCTTGAAAAATTTCAGACCCAAGCAAACTATCTTAGAAGCTGAAGGTGAAACAGCCAAGTCAAAGAACCTGCAGGGTTCTTCTAGTGAGTGGGTTGATGTGATGAAGAGGAAAAGAGCGATTCACGAAAATGTGATTAATATGGTGCATCAGCAAAGCTCAAAAAATAACATGGAGGAGTTTCAGGAGGAGATACAATCGGAAGGCAGTTCAAAGAAAAAGAAGACAAAAGGAGCTTTTAGTTTTAAGAAAAAGCCTGAAAGTTTCAAAGACGAAGATTACTTCATAAGTTCAATACCAAAAAACCATCACACCGAATCAGGACTATTAGTTAGAGCAAACCAGGACTTCAATTCAAATAGACTGGAATCAGCTGTCCTAGATCTAGTGGGGGATGATAGTCATAGCATGCAGAAGCAGAAATCTCAGTACCATTGGGATAAGAGGAGCAAAAAGTACATCAAGCTAAACAATGGTGATCATGTTACAGCTAGTGGAAAGATAAAGACAGAGAGTGGTGCAAGAGTAAAGGCAAGCAAGACTGGCATATATGATAAATGGAAAAAACAATTCCATGATAAGATATCTCTTAAGGGGACAAACTCGGAGGTTGAAGGGAGCACTAGGGCAACCACAAGCTTGACTGGTCGTCGCTTGCCTCAAAAGGGTTTCAGAAAATACAAAGGCAGTAAGCAGGGTATAGTACCCAATGCACACGTGCGGTCTGAAATCAAAGATCTAGAACAAATCAGGAAGGAGAGGCAGAAGAAGGCAAGCAAAATATCGTATATGAAGAACAAGTCTGCTGCTAATAAGCATAAAAAGTGCGGTAAAAATGGTAAAAGAGGAAAGGCCAAGTAG 2358 0.4177 MGSKADLKRKHKQQKKAKSGGFESLNLSPNVYRGVRRKGYKVPTPIQRKTMPLILDGSDVVAMARTGSGKTAAFLVPMLQRLQQHAAQAGVRALILSPTRDLAIQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLCEVEDMSLKTVEYVVFDEADCLFSMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPHLIRLDVDTKISPDLKLVFFTLRQEEKHAALLYLIREQISSDQQTLIFVSTKHHVEFLNILFREEGLEPSVCYGDMDQDARKIHISRFRARKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTSYSFLTSEDMPYLLDLHLFLSKPIKPAPTEEEVLRDKDGVMSKIEQAIANGVTIYGRLPQGLIDLGSDRMRDIIGSSAELNALHKTCTNAFRLYSKTKPLPSKESIRRAKDLTREGLHPIFQNVLESGELLALAFSERLKNFRPKQTILEAEGETAKSKNLQGSSSEWVDVMKRKRAIHENVINMVHQQSSKNNMEEFQEEIQSEGSSKKKKTKGAFSFKKKPESFKDEDYFISSIPKNHHTESGLLVRANQDFNSNRLESAVLDLVGDDSHSMQKQKSQYHWDKRSKKYIKLNNGDHVTASGKIKTESGARVKASKTGIYDKWKKQFHDKISLKGTNSEVEGSTRATTSLTGRRLPQKGFRKYKGSKQGIVPNAHVRSEIKDLEQIRKERQKKASKISYMKNKSAANKHKKCGKNGKRGKAK* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01686 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 376 IPR027417 -
Pte5g01686 785 SMART helicmild6 277 358 IPR001650 -
Pte5g01686 785 MobiDBLite consensus disorder prediction 560 579 - -
Pte5g01686 785 Pfam DEAD/DEAH box helicase 44 211 IPR011545 GO:0003676|GO:0005524
Pte5g01686 785 CDD DEADc_DDX54 20 225 IPR033517 -
Pte5g01686 785 SMART ultradead3 39 239 IPR014001 -
Pte5g01686 785 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 10 691 - -
Pte5g01686 785 MobiDBLite consensus disorder prediction 766 785 - -
Pte5g01686 785 Coils Coil 736 756 - -
Pte5g01686 785 SMART DBP10CT_2 627 689 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pte5g01686 785 MobiDBLite consensus disorder prediction 744 759 - -
Pte5g01686 785 MobiDBLite consensus disorder prediction 1 24 - -
Pte5g01686 785 Pfam Helicase conserved C-terminal domain 248 358 IPR001650 -
Pte5g01686 785 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 397 IPR001650 -
Pte5g01686 785 Gene3D - 3 227 IPR027417 -
Pte5g01686 785 Gene3D - 237 427 IPR027417 -
Pte5g01686 785 CDD SF2_C_DEAD 246 367 - -
Pte5g01686 785 MobiDBLite consensus disorder prediction 744 785 - -
Pte5g01686 785 Pfam DBP10CT (NUC160) domain 627 689 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pte5g01686 785 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 224 IPR014001 -
Pte5g01686 785 MobiDBLite consensus disorder prediction 553 579 - -
Pte5g01686 785 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01686 Pte-Chr5 39346547 39355741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01686 22 391 Eukaryotic Initiation Factors Gene Family AT1G72730 32.162 2.98e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01686 K14808 - qsu:112035421 1192.95