Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01661 ATGGATGACGAGGAGCATTACGACGAGGAGCAAGAGATTCACGGAGACGGAGACATGGAACACGATTCCGGTTCTTCGAAGATGGGATTGAATCGAGAGGACCACGAACACGAGCATGATCCTAACAAGGACTTGGAGGAAATGAAGAAAAGGCTGAAGCAGATTGAAGAAGAAGCTGGGGCCCTTCGTGAAATGCAGGCTAAGGTTGAAAAAGAGATGGGTGTTGTTCAAGAGTCCTCTGATTTCTCTTCAACACAGGCTGAAAAGGAGGAAGTGGACGCACGGTCCATTTATGTTGGTAATGTTGATTATGCCTGTACACCTGAAGAGGTCCAGCAGCACTTCCAATCTTGCGGAACTGTGAATAGAGTGACCATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGAAGCTGTGCAGAATGCTCTCTTGCTGAATGAATCAGAATTGCATGGTCGTCAATTGAAGGTATCTGCAAAGAGGACAAACGTTCCAGGGATGAAGCAGTACCGCGGGAGACTGCCCAACCCATATTTCGGTCGTGGAAGACCCTTCATGGCTGCCCCTTCATTTGGGAGGGTTCCAAGATTCAGGCGACCCATGCGGTATAGGCCTTACTAG 648 0.4753 MDDEEHYDEEQEIHGDGDMEHDSGSSKMGLNREDHEHEHDPNKDLEEMKKRLKQIEEEAGALREMQAKVEKEMGVVQESSDFSSTQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRLPNPYFGRGRPFMAAPSFGRVPRFRRPMRYRPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01661 215 SMART rrm1_1 96 167 IPR000504 GO:0003723
Pte5g01661 215 CDD RRM_II_PABPs 96 167 - -
Pte5g01661 215 Gene3D - 28 168 IPR012677 -
Pte5g01661 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 191 - -
Pte5g01661 215 FunFam Polyadenylate-binding protein 1 89 175 - -
Pte5g01661 215 MobiDBLite consensus disorder prediction 12 46 - -
Pte5g01661 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Pte5g01661 215 SUPERFAMILY RNA-binding domain, RBD 84 194 IPR035979 GO:0003676
Pte5g01661 215 Coils Coil 45 72 - -
Pte5g01661 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
Pte5g01661 215 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01661 Pte-Chr5 39025165 39030574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01661 96 167 Eukaryotic Initiation Factors Gene Family AT2G36660 36.986 1.53e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01661 K14396 - tcc:18605250 295.049