Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01655 ATGGCGGATGCTCCGGCGAGTCCAGCAGGTGGGAGTCACGAGAGTGGTGGCGAGCAAAGTCCACGCTCGGGTCATAGTGCACGCGAACAGGACCGCTTCCTTCCTATTGCGAATATCAGTCGGATCATGAAGAAAGCGTTGCCTGCGAATGGTAAGATTGCAAAGGATGCTAAAGACACCATGCAGGAATGTGTTTCTGAATTCATCAGCTTCATTACCAGCGAAGCTAGTGACAAGTGCCAGAAGGAAAAGAGGAAGACCATTAATGGGGATGATTTATTGTGGGCTATGGCAACACTAGGGTTTGAGGATTACATAGAGCCACTTAAGGTCTACCTAGCTAGGTACCGAGAGTTGGAGGGTGATACAAAAGGTTCTGCTAGAAGTGGAGATGGTTCTGCCAAAAGGGATGGAGTTAACGTTGGAGTGCAAAATCCACAGTTTGTTCACCAAGGTTCATTAAACTATATGAATACACAATTTTAG 486 0.4691 MADAPASPAGGSHESGGEQSPRSGHSAREQDRFLPIANISRIMKKALPANGKIAKDAKDTMQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDTKGSARSGDGSAKRDGVNVGVQNPQFVHQGSLNYMNTQF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01655 161 FunFam Nuclear transcription factor Y subunit B-3 22 145 - -
Pte5g01655 161 SUPERFAMILY Histone-fold 30 135 IPR009072 GO:0046982
Pte5g01655 161 MobiDBLite consensus disorder prediction 1 31 - -
Pte5g01655 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte5g01655 161 Gene3D Histone, subunit A 22 151 IPR009072 GO:0046982
Pte5g01655 161 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte5g01655 161 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Pte5g01655 161 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Pte5g01655 161 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Pte5g01655 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01655 Pte-Chr5 38951870 38956779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01655 1 160 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.758 5.98e-82 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte5g01655 CBFD_NFYB_HMF 1.2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01655 K08065 - jre:109002991 285.804