Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01654 ATGACTGTGAGTAACAACAGCAGCAGCAACCACGGCAATATGGGGCAGTTTGGTGATACAACCCTCACAAAAGTTTTCGTTGGAGGGTTAGCATGGGAAACCCCTAAGGAACTATTGAGAGATCACTTTGAAAAGTATGGTGAGATCCTGGAGGCTGTGATCATCTCAGACAAGGTCACTGGCAGATCCAAAGGATATGGCTTTGTTACGTTCAAAGAAGCTGAAGCTGCAAAGAAGGCATGTGAGGATGCTAACCCAATCATCCATGGCCGACGAGCCAACTGTAACCTTGCTTCCCTTGGTGCCTGCCGCCAAAGAGCTTCATCCGTCCCACCATCACCTCTTCCTGCCGCTCCTCTCCCTCAACAAGTGATGTTTCGCAAAGGAGGTAATGGTGGGTCAACTCTTGCTGCAGCCACTGCAAATCAAGTCCAGTGGTACTATCCTGTTGGAGTACCTGCAACTCCATATCATCATCAACAGCATCATGTCGTTCCTTACTATGGATACACTCCAACCTATTTTGCCAGCGGCATCAATTACAATCATAAGCTGAGCTATTCAAATGGAGGGGCCTACGTGAACAGTCACTTTTCTCCGATGTATCCTGCTGGACAACCTGTGGTTGGTGCCAACACAATGATGCCTATCTACCCTGTATGTCACATTCCTCAAATGCAAACCATGGGCATACCTGCAGCACACATATACCAACAAGCAACGCCGGCATCCCTGGCCACGATGCCAACTAGGGTGTCAAAGGCAGCACCCATTGTCTCCACCCCTAACACAGGTAACCACTCTTGCATTGCATCTATTATCTATAACACTTATACAGACAGACTCACATGTATTATTATTAAGTACTGCTGGTTGACACATATATCTGCACGCTGTAATCAATGA 906 0.4724 MTVSNNSSSNHGNMGQFGDTTLTKVFVGGLAWETPKELLRDHFEKYGEILEAVIISDKVTGRSKGYGFVTFKEAEAAKKACEDANPIIHGRRANCNLASLGACRQRASSVPPSPLPAAPLPQQVMFRKGGNGGSTLAAATANQVQWYYPVGVPATPYHHQQHHVVPYYGYTPTYFASGINYNHKLSYSNGGAYVNSHFSPMYPAGQPVVGANTMMPIYPVCHIPQMQTMGIPAAHIYQQATPASLATMPTRVSKAAPIVSTPNTGNHSCIASIIYNTYTDRLTCIIIKYCWLTHISARCNQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01654 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 85 IPR000504 GO:0003723
Pte5g01654 301 PANTHER BOULE-RELATED 6 248 - -
Pte5g01654 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Pte5g01654 301 SMART rrm1_1 24 96 IPR000504 GO:0003723
Pte5g01654 301 CDD RRM_RBM24_RBM38_like 23 98 - -
Pte5g01654 301 FunFam Putative RNA-binding protein ARP1 17 106 - -
Pte5g01654 301 Gene3D - 17 103 IPR012677 -
Pte5g01654 301 SUPERFAMILY RNA-binding domain, RBD 22 110 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01654 Pte-Chr5 38946569 38950035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01654 19 219 C2H2 Transcription Factor Family AT2G19380 27.885 3.07e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01654 - - mnt:21397268 306.99