Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01639 ATGGGTTCTGTTGAGGATAAATCTAAAAGTGGGGTTTTGACTGGCGGGACTCAAACTCTAGCTACTGAGATGAAGCTCTTGCAAGAAATGCACGAACACAATGTTTCAGGGGTCCGAAAGGCATTAAATAACGAGTTATGGCATGCCTGTGCTGGGCCACTTGTTTCCTTGCCCCAGGTGGGGAGCCTTGTGTATTATTTCCCTCAGGGACACAGCGAGCAGGTAGCAGCTTCCACCAAGAGATCAGCAAACTCGCAGATTCCCAATTATCCCAATCTCGCGTCTCAATTGTTATGCCAAGTTCAAAATGTTACGCTTCACGCAGACAAGGAAACGGATGAAATATATGCACAGATGAGCCTGCAACCAGTGAATTCTGAAAGAGATGTCTTTCCCATACCTGATTTTGGGTTTAAGCCCAGCAAACACCCAAGCGAGTTCTTCTGTAAAACTTTGACAGCTAGTGACACGAGCACACATGGTGGATTCTCTGTGCCGCGCAGGGCAGCGGAGAAGCTCTTTCCTCCACTAGATTACACCAGTCAGCCACCGACTCAAGAACTTGTTGTTCGAGACTTGCATGAGAATACGTGGACATTTCGACACATATATCGCGGCCAGCCAAAAAGACATCTTCTCACAACTGGGTGGAGCATGTTTGTTGGCTCAAAAAGGCTCAAAGCTGGTGATGCTGTTCTTTTCATCAGGGATGATAAATCTCAACTATTAGTTGGTGTGAGGCGAGCGAATCGTCAACCAACAACGCTACCTTCATCAGTTCTGTCAGCTGATAGCATGCACATTGGCGTGCTGGCTGCCGCTGCTCATGCTGCTGCTAGCAAAAGTCCTTTCACCATATTTTACAATCCGAGGGCTTGTCCTTCAGAATTTGTCATTCCTCTGGCTAAATACAGAAAAGCTGTTTATGGTACACAACTTTCAGCAGGCATGAGATTTGGGATGATGTTTGAGACAGACGATTCGAGCAAGCGCAGATTTATGGGTACTGTAATTGGTACCAGCGACCTAGATCCTCTGAGATGGCCTGGCTCTATGTGGCGAACCATTCAGGTTGAGTGGGATGAGCTCGGATCCAGTGATAAACCGAATAGAGTTAGTTCCTGGGAAATTGAGACTCCAGAAAGCTTATTTATCTTTCCTTCATTGGCGTCTGGTCTCAAACGGCCATTGTATTCTGGATTTTTTGGAGCAGAACTTGATCAGGGAGTCCCCATAAGAAGGTCTTTCATACATGACCCTGAAAATGTAAATGTACACATTTCAAACTCTCTTCCGAATCAGTATTCAGAACATTTGATCAAGACATTAAAACCTCAGACTATCCACTTCCTTGGGAACTATACCTCTGTCAAGTGTCAAGACTTTGCTGGTAAGGGAGATTTTTCACAGGATATGCACAACGTGCTGGAGATGCATAACCACAATATCCAAACAAAATGCTTGGAAAGCATGTTGTTACAAAATCAAGTTCTTTCTCAAGTTCCTCATGACCAACCACATACCTTACGTGTAAATTCAATGTCAAAGGTTGAACAATCTAGTAAACTGAAAATTGTGGCCAAAACTGAAAGCCAACACCATTCTGGAGTGGTTCCTGACGACAGATCACGTCTGAATTCTGAGATCTTGACTGATCATATGTCTACATTGACCTCTTTCGGAGAATGCAATATTGAAAACTTGATTGCGACCCCTATTGTTTCACAGAATCATGTCGGGCAGTTAGTACCTTGTAATCAAAATCAAGCGTTCCAACAATTGCAACCTAGACTTCAGTCCATGCAACCTCAATTTGATGTACCCCAACCTGACTCTTTCTATCTAAGTGGCTTCGTTCCTTGTGTAGAGACTAATGACTGGATGCCTTTTCTTTCTGCTAATGGAATAATGAGCTCAAACGAGCCTTCATCCTCATTAGCCTCTGAAGATCATCCTGCTCTCCTACCAGAAGTAAATAATCCTGCTTTGTTACCAATGCATCAGGACATGATAGACCAGCATCCAAGGAATTCAAGTTTTTTTCCACAAAGAAACCAAGTCGAAGGATCTCATCGAGAAACTTCCAACCTCAAGTGTATGTCTAGTTCAAATGACCTTAAAGATCTCTCTGATGAAAGCAATAACCACAGTGGGGCTTACAGTGCGCATAATGGTGATAATGGTAATGGCACCGTGGTTGATCCTTCTGTCTCAAACGCTGTTCTGGATGAGTTTTGCACGTTGAAAGATGATTGCGTTGTGGGCAACTTAAGTTCAAGCCAAGATCTCCAATCACAGATAACTTGCGAAGGCTTAGCAGAATCTCAAACTTTCTGTGTGCAAGAGTTTCATGACAACTCAGTTTGTACATCTTCAAGTAATGTTGATTTTGATGGTAGTTGTCTTCTTCAGAATAGCTCATGGCAGCATATGCCGCCGCCGCCCATACGCACATACACTAAGGTGCAAAAGGCAGGATCTGTCGGGAGGTCAATTGACGTCACTTGTTTCACAAACTACGAGGAACTTTGCTCAGTGATTGAGCGCATGTTTGGACTCGACGGTCTGCTTAATAATAAAGGTTCAGGATGGAAATTGGTGTACGTGGATTATGAGAATGATGTCTTACTTGTTGGGGACGATCCCTGGGAGGAATTTGTTGGCTGTGTCCGCTGCATCAGAATACTTTCGCCTTCAGAAGTTAAGCAGATGAGCGAAGAGGGAATGCAACTTCTCAACAGCGCTGCAATGCAGGGGATCAATGGCTCCATTCCCGAGTAG 2781 0.4423 MGSVEDKSKSGVLTGGTQTLATEMKLLQEMHEHNVSGVRKALNNELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTKRSANSQIPNYPNLASQLLCQVQNVTLHADKETDEIYAQMSLQPVNSERDVFPIPDFGFKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTSQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSMFVGSKRLKAGDAVLFIRDDKSQLLVGVRRANRQPTTLPSSVLSADSMHIGVLAAAAHAAASKSPFTIFYNPRACPSEFVIPLAKYRKAVYGTQLSAGMRFGMMFETDDSSKRRFMGTVIGTSDLDPLRWPGSMWRTIQVEWDELGSSDKPNRVSSWEIETPESLFIFPSLASGLKRPLYSGFFGAELDQGVPIRRSFIHDPENVNVHISNSLPNQYSEHLIKTLKPQTIHFLGNYTSVKCQDFAGKGDFSQDMHNVLEMHNHNIQTKCLESMLLQNQVLSQVPHDQPHTLRVNSMSKVEQSSKLKIVAKTESQHHSGVVPDDRSRLNSEILTDHMSTLTSFGECNIENLIATPIVSQNHVGQLVPCNQNQAFQQLQPRLQSMQPQFDVPQPDSFYLSGFVPCVETNDWMPFLSANGIMSSNEPSSSLASEDHPALLPEVNNPALLPMHQDMIDQHPRNSSFFPQRNQVEGSHRETSNLKCMSSSNDLKDLSDESNNHSGAYSAHNGDNGNGTVVDPSVSNAVLDEFCTLKDDCVVGNLSSSQDLQSQITCEGLAESQTFCVQEFHDNSVCTSSSNVDFDGSCLLQNSSWQHMPPPPIRTYTKVQKAGSVGRSIDVTCFTNYEELCSVIERMFGLDGLLNNKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVKQMSEEGMQLLNSAAMQGINGSIPE* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01639 926 SUPERFAMILY DNA-binding pseudobarrel domain 135 277 IPR015300 -
Pte5g01639 926 SMART B3_2 148 250 IPR003340 GO:0003677
Pte5g01639 926 Gene3D - 146 249 IPR015300 -
Pte5g01639 926 FunFam Auxin response factor 813 905 - -
Pte5g01639 926 ProSiteProfiles PB1 domain profile. 817 900 IPR000270 GO:0005515
Pte5g01639 926 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte5g01639 926 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Pte5g01639 926 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Pte5g01639 926 Gene3D - 312 384 - -
Pte5g01639 926 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 906 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte5g01639 926 Pfam AUX/IAA family 814 903 IPR033389 -
Pte5g01639 926 CDD B3_DNA 147 248 IPR003340 GO:0003677
Pte5g01639 926 FunFam Auxin response factor 146 250 - -
Pte5g01639 926 FunFam Auxin response factor 312 384 - -
Pte5g01639 926 MobiDBLite consensus disorder prediction 674 731 - -
Pte5g01639 926 SUPERFAMILY CAD & PB1 domains 829 895 - -
Pte5g01639 926 Gene3D - 815 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01639 Pte-Chr5 38794038 38800096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01639 19 924 B3 DNA Binding Superfamily AT1G19850 56.017 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte5g01639 AUX_IAA 4.2e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01639 K14486 - qsu:112011953 1117.83