Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01630 ATGTTCTCTACGAATCCATGGGTGTCTGTGCCTCAACAGAGAGCTTACTGGACTAGGCATGAGGACAGGTTGTTCGAGCAAGCTATTCTTATGATTCCAGAGGGAACACCAGGCAGGTGGCAGAAGATTGCAGAACAAGTCCCGGGTAAGTCTGCTATGGAAATTGAGGAACACTATGAGGCTTTACTTCATGATGTGGATGTGATTGAGTCTGGACGAGTTGAGTTTCCGGATTATAATGATGAGTCGAGGGATATGCCTGGGTGGGACTCTGTGAATCAGATTTCTTTTGGGTCTGGGAGAGCGAGAAGTGAGTCAGAGAGGAAGAAGGGGACTCCATGGACTGAAGAAGAACACAGGTTGTTTCTTATTGGACTGAAGAAATTTGGTAAAGGAGATTGGAGGAGTATATCAAGGAATATTGTGGTGTCAAGAACACCAACCCAGGTAGCTAGTCATGCCCAGAAGTATTTCCTCCGCCAGAGCTCGGTGAAGAAAGAGAGGAAAAGGTCAAGTATTCATGATATTACCACTGTAGATAGGGAGCCAGTGCCTCCCCCTGTTGATCAGAAATGGATCCCTCCTGCTAATGTTCCAATGCACCATCTTCCACAAGAATTGCACCGAGAGCCTCAAAACCATATGTATCCTCCTATCCCGATGCAGCAGACACAAGAACTGCAGCAACTGAACGATCAAAACCGTATGCATCCTTATGTCCGGATGCAACAAATGAACAGTCAAAACCTTATGCATCCTGTTGCTCCAAAGCAGCAGACACAAGAACTACAGCAGCTAAACCCTCAAATCCATATGCCTGATCAAATGGGTGGACTAGGGCACCAAAAGTTTAGATTTGACATGTAG 867 0.4602 MFSTNPWVSVPQQRAYWTRHEDRLFEQAILMIPEGTPGRWQKIAEQVPGKSAMEIEEHYEALLHDVDVIESGRVEFPDYNDESRDMPGWDSVNQISFGSGRARSESERKKGTPWTEEEHRLFLIGLKKFGKGDWRSISRNIVVSRTPTQVASHAQKYFLRQSSVKKERKRSSIHDITTVDREPVPPPVDQKWIPPANVPMHHLPQELHREPQNHMYPPIPMQQTQELQQLNDQNRMHPYVRMQQMNSQNLMHPVAPKQQTQELQQLNPQIHMPDQMGGLGHQKFRFDM* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01630 288 FunFam transcription factor MYB1R1 112 163 - -
Pte5g01630 288 CDD SANT 113 158 IPR001005 -
Pte5g01630 288 Gene3D - 9 76 - -
Pte5g01630 288 FunFam Transcription factor SRM1 10 76 - -
Pte5g01630 288 Gene3D - 112 164 - -
Pte5g01630 288 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Pte5g01630 288 SUPERFAMILY Homeodomain-like 9 64 IPR009057 -
Pte5g01630 288 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 260 IPR043363 -
Pte5g01630 288 MobiDBLite consensus disorder prediction 80 112 - -
Pte5g01630 288 CDD SANT 17 63 IPR001005 -
Pte5g01630 288 SMART sant 110 160 IPR001005 -
Pte5g01630 288 SMART sant 13 65 IPR001005 -
Pte5g01630 288 SUPERFAMILY Homeodomain-like 108 163 IPR009057 -
Pte5g01630 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 162 IPR017930 -
Pte5g01630 288 Pfam Myb-like DNA-binding domain 113 158 IPR001005 -
Pte5g01630 288 Pfam Myb-like DNA-binding domain 16 60 IPR001005 -
Pte5g01630 288 MobiDBLite consensus disorder prediction 87 101 - -
Pte5g01630 288 ProSiteProfiles SANT domain profile. 109 162 IPR017884 -
Pte5g01630 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Pte5g01630 288 ProSiteProfiles Myb-like domain profile. 106 158 IPR001005 -
Pte5g01630 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01630 Pte-Chr5 38677942 38679933 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g01630 Myb_DNA-binding 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01630 - - qsa:O6P43_004879 290.041