Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01624 ATGTCTAAGAGAAGGTTCGGGTTTGAAGGTTTCGGTATAAACCGGCAAACAACGTATAATTTTGAGCGATCTCAAGCTCCTCAACGACTTTATGTACCTCCATCTTCGCGCTCTCAGGCACACGATAATTTCGAGGATACTGATTTAGACAACATTGAATACGAGGAGAATGACAATAGCAAGGAAGTTGCTAACCAAATTGACGGTGACGATGGTGAAATTGACCCTTTGGATGCTTTCATGGAAGGTATTCACGAGGAAATGAGAGCTGCTCCACCACCTAAACCTAGGGTGGAAGATAAGTATAAGGATGACGAAGACAATGATCCCATAGAGAGTTATTTGAAGGCAAAAAAAGACATCGGTCTCACATTGGCGTCTGAGGTTCTTCATGCTGGGTATGATTCTGATGAGGAAGTTTATGCTGCAGCTAAGGCCGTGGATGCTGGACTGGTGGAGTATGATTCAGATGATAATCCGATTGTCACGGATAAGAGGAAGATCGAGCCTATTCCAGCTCTGGATCACAGTGCAATTGAGTATGAGCCTTTTGATAAGGACTTTTACGAGGAGAAAGCTTCAATATCTGGTATGAGCGATCAGGACGTTGCTGAATACAGGAAGAGTTTGGCTATTCGTGTATCAGGGTTTGATATTCCAAGACCAATTAAGACTTTTGATGACTGTGGTTTCTCTCCACAGCTCATGAGTGCCATAAAAAAACAAGGGTACGAGAAGCCTACTTCAGTACAATGTCAAGCCCTACCAGTCGTCCTATCTGGTAGAGATGTTATTGGCATTGCAAAAACTGGTTCCGGCAAAACTGCTGCTTTTGTGCTTCCCATGATTGTGCATATTATGGATCAGCCTGAACTTGAGAAAGAAGAGGGTCCTATCGGCGTGATATGTGCACCGACCAGAGAATTGGCCCATCAAATATACTTGGAAGCCAAGAAATTTGCCAAACCACATGGTGTTCGCGTTTCTGCTGTCTACGGTGGGATGTCCAAACTAGAGCAGTTCAAAGAACTCAAGGCAGGTTGTGAGATAGTTGTTGCAACTCCTGGGAGATTGATTGACATGCTAAAGATGAAGGCTCTTACTATGTCAAGAGCAACCTATTTGGTACTTGATGAAGCTGATAGGATGTTTGACCTAGGATTTGAGCCACAGATTAGGTCCATTGTAGGTCAGATAAGGCCAGATCGCCAAACTTTACTATTTTCTGCAACAATGCCACGTAAAGTTGAAAAGCTTGCAAGGGAAATCCTTACAGATCCTATTCGAGTTACAGTGGGGGAGGTGGGAATGGCAAATGAGGACATTACTCAACTTGTTGAAGTGATTCCTTCTGATGCAGAGAAAATGCCATGGCTTCTTGGAAAGTTGCCTGAAATGATTGATGAGGGTGATGTTCTAGTTTTTGCTTCCAAAAAGGCTACAGTTGATGAAATAGATTCACAGTTGTCTCAGAGGGGCTTTAAAGTTGCAGCTCTTCATGGTGATAAAGACCAAGCTTCTCGGATGGATATTTTGCAAAAATTCAAATCTGGCATATACCATGTGCTTATTGCAACTGATGTTGCTGCACGAGGTCTTGATATTAAGTCAATAAAGTCAGTGGTGAACTTTGATATTGCAAAAGACATGGACATGCATGTGCATCGTATTGGTAGAACAGGCCGTGCCGGTGACAAAGACGGGGTTGCGTACACTCTTGTCACTCATAAGGAAGCAAGATTTGCTGGTGAATTGGTGAATAGCTTAATTGCTGCTGGTCAGAATGTTCCGGTGGAGTTGATGGATCTTGCCATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCTAGAAAAGGAGGTGGGAAGAAAGGTAAAGGGAGGGGTAGTGGTGGTCGTGGAGTGCGGGGTGTGGATTTCGGCTTGGGTATTGGATATAACCCAGAATCAAACAATACATCAAGTGGAGGTCGGTCGGCTGCTGTCAATTCACTAAGAACAGGAATGATGGCACAATTCAAAAGCAACTTCGTCGCAGCTTCTTCAAATTCTCACAATCAAGGTTTCAGCAATAGTTCTAGCATGCCTGCTAGCAAAAGACCTGCTCTTTCGGGATTTGTATCTGGTGGTTCCATTGGCGGGGACATAAATAAAGCTCATACAACCACCACATTTACGCCTGCAACTTCTGCTGTGAATGCCTCCAGTCGGAACCATGGAAATAGTTCTAGCGAGAAGAATGTAGAAAGTTCTAGACCTCGAGAAAGACGGAGGCCTTCTGGCTGGGATTGA 2289 0.4408 MSKRRFGFEGFGINRQTTYNFERSQAPQRLYVPPSSRSQAHDNFEDTDLDNIEYEENDNSKEVANQIDGDDGEIDPLDAFMEGIHEEMRAAPPPKPRVEDKYKDDEDNDPIESYLKAKKDIGLTLASEVLHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVTDKRKIEPIPALDHSAIEYEPFDKDFYEEKASISGMSDQDVAEYRKSLAIRVSGFDIPRPIKTFDDCGFSPQLMSAIKKQGYEKPTSVQCQALPVVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPHGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQLVEVIPSDAEKMPWLLGKLPEMIDEGDVLVFASKKATVDEIDSQLSQRGFKVAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLVTHKEARFAGELVNSLIAAGQNVPVELMDLAMKDGRFRSKRDARKGGGKKGKGRGSGGRGVRGVDFGLGIGYNPESNNTSSGGRSAAVNSLRTGMMAQFKSNFVAASSNSHNQGFSNSSSMPASKRPALSGFVSGGSIGGDINKAHTTTTFTPATSAVNASSRNHGNSSSEKNVESSRPRERRRPSGWD* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01624 762 SMART ultradead3 243 445 IPR014001 -
Pte5g01624 762 FunFam probable ATP-dependent RNA helicase DDX17 186 433 - -
Pte5g01624 762 Gene3D - 186 431 IPR027417 -
Pte5g01624 762 Pfam DEAD/DEAH box helicase 248 419 IPR011545 GO:0003676|GO:0005524
Pte5g01624 762 CDD DEADc_DDX42 235 431 - -
Pte5g01624 762 MobiDBLite consensus disorder prediction 89 108 - -
Pte5g01624 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 224 252 IPR014014 GO:0003724
Pte5g01624 762 MobiDBLite consensus disorder prediction 611 635 - -
Pte5g01624 762 MobiDBLite consensus disorder prediction 681 701 - -
Pte5g01624 762 Gene3D - 432 608 IPR027417 -
Pte5g01624 762 MobiDBLite consensus disorder prediction 19 47 - -
Pte5g01624 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 433 IPR027417 -
Pte5g01624 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 602 IPR027417 -
Pte5g01624 762 MobiDBLite consensus disorder prediction 747 762 - -
Pte5g01624 762 MobiDBLite consensus disorder prediction 615 629 - -
Pte5g01624 762 MobiDBLite consensus disorder prediction 717 762 - -
Pte5g01624 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 376 384 IPR000629 -
Pte5g01624 762 CDD SF2_C_DEAD 442 574 - -
Pte5g01624 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 604 IPR001650 -
Pte5g01624 762 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 604 - -
Pte5g01624 762 Pfam Helicase conserved C-terminal domain 468 564 IPR001650 -
Pte5g01624 762 MobiDBLite consensus disorder prediction 19 40 - -
Pte5g01624 762 MobiDBLite consensus disorder prediction 681 698 - -
Pte5g01624 762 MobiDBLite consensus disorder prediction 717 746 - -
Pte5g01624 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 430 IPR014001 -
Pte5g01624 762 SMART helicmild6 483 564 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01624 Pte-Chr5 38608548 38612220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01624 222 603 Eukaryotic Initiation Factors Gene Family AT3G19760 31.688 4.06e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01624 K12835 - gmx:100814854 1244.95