Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01620 ATGGATACATCAAACCCTTCTGCATTTGTGAACGCGGGGTTGTTGCGCAGTTATATTGGGAGGAAAGTTCGTACGGTGGTTCAAGTAATGAATTCTGATGGTGGAGTTGTGCAAGGAAAATCCACAGATGATGGGCTTCTGTACATTAAAGGGTTGCCTTCATCCCAGGTTTCTCCAATGAATTATGTTGAGGTTATTGGTGTCGCTGAGAATAATCAATCAATCAATGCTGATGTATGGACTGACTTTGGCAAACAATTTGATACCCAGCCTTATAACCAATTGTGTCAACTTGCAAATGGTGACTTCAAGCATCTGTTTCTGTAG 327 0.4159 MDTSNPSAFVNAGLLRSYIGRKVRTVVQVMNSDGGVVQGKSTDDGLLYIKGLPSSQVSPMNYVEVIGVAENNQSINADVWTDFGKQFDTQPYNQLCQLANGDFKHLFL* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01620 108 CDD RPA3 6 107 - -
Pte5g01620 108 Gene3D - 1 108 IPR012340 -
Pte5g01620 108 Pfam Replication factor A protein 3 1 101 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte5g01620 108 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 108 - -
Pte5g01620 108 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01620 Pte-Chr5 38580221 38581431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01620 1 109 Core DNA Replication Machinery Family AT3G52630 60.909 1.01e-43 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01620 K10740 - qsa:O6P43_004885 156.762