Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01612 ATGTCTTCCCTGTCCACCTTAACTAAATCTGTGACAGCATTGATAAACCTTAAACCTGCAGTACTTCATGATGGAAACCCTAACTTCAATTTGAAAATCAAAGTGTTCAACTCATCCCATTACCAACATAATGTCCTTACCCTTTCTTCTATTAGCATTTCTTGTTCTTCTTCCATGTCCAAAACTACTGCAAGAGCAACTTCGGTACAAAGTTCTTGTCTCATTTCTTCTTCTAAAACTGAGAACCGCCACTGGATGGTATACATGGAGAGACCTCCTGAAGGCATCAGCACCAAATTTGAAGTTATTAATTACTATGTTAAGACATTACAAAGAGTTTTAGGAAGTGAAAAAGATGCACAGATGTGTATATACAATGCTTCATGGGAGGCCCAATTCGGTTTTTGTTGTGAAATTGACGAAGAACTGTCTAGGGAGCTTGCTTGTTTACCAGGGGTTCGATTGGTTACGCAGGATCCAACTTGTGACACTTTAGAAAAAGATTACAGGTTCCCCAGTAATCAAGGGAATAAACACTTGAGATCCCAGAGCAATCCAACTATGTTGTTCCCTGCTGGGAATACTAAGCATTGGCTGGTTAGATTGAAGAAACCTGGAATTGGGGTTGTTACGAAAGCTCAAATGGTTGATTACTATGTGCAAATACTCTCCAAGGTCTTAGGAAATGAAACGGACGCACAAATGTGTATATATCATGTCTCCTGGAAATCAAATTTTGGCTTCTGTTGTGAGCTCGATGAGGATTGTGCCCGGCAATTAGCTGGTGTGCCTGGTGTATTATCCATTCATCCAGATAACAATTTTGAGTTAGATATTAAGGATTGTGAAGTTAATAATCAACAAAGTTTGGTGAATGCGTTGAGCCCCGCTGAAGAAAGTCAACCAACCCCAGTTAAAACAAAGAAACTCTTCATTACAGGGCTATCGTTTTATACATCAGAGAAAACCTTACGTGCTGCATTTGAATGCTTTGGTGAACTTGTTGAAGTAAAAATTATTATGGACAAGATATCTAAAAGGTCCAAAGGTTATGCATTTGTGGAGTATACTACAGTGGAAGCTGCTAGTGCAGCACTGAAAGAGATGAATGGAAAAATCATCAATGGATGGATGATAGTTGTTGATGTTGCTAAAAGTAACCCACCGAAATACAGCAGGGGCCGCCCCAGATAG 1194 0.3961 MSSLSTLTKSVTALINLKPAVLHDGNPNFNLKIKVFNSSHYQHNVLTLSSISISCSSSMSKTTARATSVQSSCLISSSKTENRHWMVYMERPPEGISTKFEVINYYVKTLQRVLGSEKDAQMCIYNASWEAQFGFCCEIDEELSRELACLPGVRLVTQDPTCDTLEKDYRFPSNQGNKHLRSQSNPTMLFPAGNTKHWLVRLKKPGIGVVTKAQMVDYYVQILSKVLGNETDAQMCIYHVSWKSNFGFCCELDEDCARQLAGVPGVLSIHPDNNFELDIKDCEVNNQQSLVNALSPAEESQPTPVKTKKLFITGLSFYTSEKTLRAAFECFGELVEVKIIMDKISKRSKGYAFVEYTTVEAASAALKEMNGKIINGWMIVVDVAKSNPPKYSRGRPR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01612 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Pte5g01612 397 SUPERFAMILY RNA-binding domain, RBD 295 396 IPR035979 GO:0003676
Pte5g01612 397 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 190 278 IPR037045 -
Pte5g01612 397 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 66 163 IPR037045 -
Pte5g01612 397 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 174 377 IPR039206 GO:0016554
Pte5g01612 397 Gene3D - 280 397 IPR012677 -
Pte5g01612 397 SMART rrm1_1 309 382 IPR000504 GO:0003723
Pte5g01612 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01612 Pte-Chr5 38524938 38529986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01612 272 393 C2H2 Transcription Factor Family AT2G19380 29.197 1.15e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01612 - - qsa:O6P43_004903 509.22