Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01608 ATGATCTCTTCTGGGATTAACTTGGTGATGACTGTGATTGGGTTCGCTGTCAGCACCATGTTTATCGTTTTTGTATGTACGCGGCTTGTTTGTGCCCGAATTCATTTGAATGCTTCAAGGAGGTCCTTCCATTTTGGTTCCAGATCCGATCTCAGTTTGCTGGAACGGGGTTTAAATGGTCTTGAACCAGTAGTTGTAGCCAACTTTCCAACAAAGAAGTATGCTGACGAGTTTTTCTCTGCTGCAGAAGATGCTCAATGTACAGTTTGTCTTTCGCAGTACCATGGTGAGGATATACTGCGTATACTTCCATACTGTGGACACTCCTTCCATGTGAGCTGTATAGACATCTGGCTACATCAGAACTCTACTTGTCCTGTGTGTAGAATATCATTGCGCGAGTTTCCAGAACGAAAATGCTTTCTGCAGCCATTGTTCAGCTCATCCATACGATCTCAATATGAAATGGAATCCTTTGAAACCAACTTATGTAACTATCTGTTGACAGATAATAGACTTTCATCAACTGCTCATGAAAATCGCAGTGTGAACCTGACACCACAGGATCATCACACATCTGGAAGCCGGGAAGCTGATGCTGCAGAGAATGCTGATCCTTTCAGATACGGGGATCAAATCATCAAGGAAACGAGAAACAAGCACATAGAAAGCCCTTCAAGTCCCCAATGA 690 0.4333 MISSGINLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFHFGSRSDLSLLERGLNGLEPVVVANFPTKKYADEFFSAAEDAQCTVCLSQYHGEDILRILPYCGHSFHVSCIDIWLHQNSTCPVCRISLREFPERKCFLQPLFSSSIRSQYEMESFETNLCNYLLTDNRLSSTAHENRSVNLTPQDHHTSGSREADAAENADPFRYGDQIIKETRNKHIESPSSPQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01608 229 SMART ring_2 87 128 IPR001841 -
Pte5g01608 229 CDD RING-H2_EL5-like 86 129 - -
Pte5g01608 229 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Pte5g01608 229 MobiDBLite consensus disorder prediction 192 222 - -
Pte5g01608 229 MobiDBLite consensus disorder prediction 182 229 - -
Pte5g01608 229 Pfam Ring finger domain 86 129 IPR001841 -
Pte5g01608 229 SUPERFAMILY RING/U-box 79 135 - -
Pte5g01608 229 PANTHER OS11G0150450 PROTEIN 1 186 - -
Pte5g01608 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01608 Pte-Chr5 38492749 38497381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01608 8 144 C3H Transcription Factor Family AT2G34990 30.282 1.74e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01608 - - cpap:110809188 327.791