Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01597 ATGGACCCTTACGCAGACTTCCGCAAGTCCATGCAGGAGATGGTGGAGGCTCGTACAACCACAAACTCATTAATGGATGAGGAATACAATGACAGAAAAGATATTGGGACGCTTGATTGTGGGCATGATTTTCACTGTAACTGCATTAAGCAGTGGTTAATGCACAAGAATCTCTGCCCCATTTGCAAGACTACAGAATTGGCTAAGTGA 210 0.4429 MDPYADFRKSMQEMVEARTTTNSLMDEEYNDRKDIGTLDCGHDFHCNCIKQWLMHKNLCPICKTTELAK* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01597 69 SUPERFAMILY RING/U-box 28 65 - -
Pte5g01597 69 Pfam Transcriptional repressor, ovate 2 22 IPR006458 -
Pte5g01597 69 Pfam RING-H2 zinc finger domain 34 63 IPR024766 GO:0008270
Pte5g01597 69 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 67 IPR013083 -
Pte5g01597 69 ProSiteProfiles Zinc finger RING-type profile. 38 63 IPR001841 -
Pte5g01597 69 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 27 65 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01597 Pte-Chr5 38384284 38384723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01597 27 67 C3H Transcription Factor Family AT2G15530 65.854 4.49e-16 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pte5g01597 zf-rbx1 1.7e-10 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01597 - - dzi:111312594 87.0409