LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g01585	ATGTACTCTCTGCAGAATCTTCCAAGGTACTCTGCCTTGCCATTCCCAAGAAGCCATCAGCAGAGAACTTGTTGTTCTGTCAATACTTCACTGGGAATGGTCAGTTCTAGAGATCTAAGCAGAAACATGGCCGTGAAGTCGGTATCTGGTTCTACATCAAGTTCGGAGACAAGTGGTTCCGATGTCAAGGAGGAAAAGTCAGATGTATACAGTCATAACATGACTGAAGCTATGGGTGCTGTCTTGACCTATAGGCATGAACTAGGGATGAACTACAACTTCATTCGGCCAGATTTAATTGTGGGATCCTGTTTACAGACTCCTAAAGATGTCGACAAGCTTCAGAGGATAGGTGTGAAAACTATTTTTTGCTTGCAGCAAGACCCAGATCTTGAATATTTCGGGGTGGACATCAAAGCCATACAACAGTATGTGAAGATTTACAGTGCCACACAACATGTGCGTGCTGAGATAAGGGATTTTGATGCACATGATTTGCGCATGCGGCTTCCTGATGTTGTTAGCAAATTATACAAAGCGGTAAACAGAAATGGTGGGGTGACTTATGTGCACTGCACTGCTGGACTTGGACGAGCTCCAGCTGTTGCGTTGGCATATATGTTCTGGGTTCAGGGGTATAAACTCAATGAAGCTCATCAATTGCTTCAGAGCAAGCGCCCATGCTTCCCTAAATTGGACGCCATAAAAAGTGCCACTGCTGATATTCTTACAGACTTTAGAAAGAAGCCTGTCACATTGAAATGGAAAGGTCGTGGTTTTTCTTCAGTGGAAGTTTCTGGACTGGATATTGGATGGGGTCAGAGGATACCATTGGAATTTGATCGGGAAAAGGGGTTTTGGTTTCTCACTAGGGAATTGCCAGAAGGACGCTATGAATACAAGTACATTGTTGATGGAGAATGGACATGCAATAAGCTTGAACCCTTGACCTCTCCAAACAAAGATGGCCATGTCAATAATTTTCTCCAGGTCCTTGATGACAGTAGAGATAATGCTAGTGCAACTCTTAGAATGAGGTTGACTAGCGACGATCCGGATCTCACCAAAGATGAAAGACAAATTATAACAGAGTTTCTCGAAACTAGATTTGGTGGTGAGGTCTAA	1125	0.4347	MYSLQNLPRYSALPFPRSHQQRTCCSVNTSLGMVSSRDLSRNMAVKSVSGSTSSSETSGSDVKEEKSDVYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPKDVDKLQRIGVKTIFCLQQDPDLEYFGVDIKAIQQYVKIYSATQHVRAEIRDFDAHDLRMRLPDVVSKLYKAVNRNGGVTYVHCTAGLGRAPAVALAYMFWVQGYKLNEAHQLLQSKRPCFPKLDAIKSATADILTDFRKKPVTLKWKGRGFSSVEVSGLDIGWGQRIPLEFDREKGFWFLTRELPEGRYEYKYIVDGEWTCNKLEPLTSPNKDGHVNNFLQVLDDSRDNASATLRMRLTSDDPDLTKDERQIITEFLETRFGGEV*	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g01585	374	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	84	259	-	-
	Pte5g01585	374	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	246	336	-	-
	Pte5g01585	374	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	168	227	IPR000387	GO:0016311\|GO:0016791
	Pte5g01585	374	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	88	233	IPR029021	-
	Pte5g01585	374	MobiDBLite	consensus disorder prediction	45	68	-	-
	Pte5g01585	374	CDD	DSP_laforin-like	90	237	IPR045204	GO:0019203
	Pte5g01585	374	Gene3D	Immunoglobulins	246	336	IPR013783	-
	Pte5g01585	374	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	91	248	IPR020422	GO:0006470\|GO:0008138
	Pte5g01585	374	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	18	368	-	-
	Pte5g01585	374	Pfam	Glycogen recognition site of AMP-activated protein kinase	250	333	IPR032640	-
	Pte5g01585	374	CDD	E_set_AMPKbeta_like_N	250	331	-	-
	Pte5g01585	374	SMART	dsp_5	91	249	IPR020422	GO:0006470\|GO:0008138
	Pte5g01585	374	Pfam	Dual specificity phosphatase, catalytic domain	147	229	IPR000340	GO:0008138\|GO:0016311
	Pte5g01585	374	SUPERFAMILY	E set domains	249	332	IPR014756	-
	Pte5g01585	374	Gene3D	Protein tyrosine phosphatase superfamily	84	365	IPR029021	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g01585	Pte-Chr5	38300726	38308065	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g01585	90	375	Protein tyrosine phosphatase (PTP) family	AT3G52180	71.329	4.75e-154	433

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g01585	-		-	qsa:O6P43_004959	574.318