Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01578 ATGAACAGGGCTACAGGCAAAGGGTACTGGAAAGCAACAGGAAATGATCGTCCAGTTCGGCATGAGTCGAGGACAGTTGGTTTGAAGAAAACTTTGGTATTTCATAGTGGCCGAGCCCCAGATGGAAAGCGGACTAACTGGGTCATGCACGAATACAGGCTGGTTGAAGAGGAATTGGAGAGATCTGGGATTGGGTCCACACAGGATGCATACGTCTTGTGTAGGGTATTTCATAAAAATAACATTGGACCACCAAATGGACAACGGTATGCTCCTTTTATCGAGGATGAATGGGATGATACAAAAGCATTGATACCAGGGGAAGGAACGGCTTTTGAAACTCCTGAATTAGAAAATAGAAAAAGCATTGGATATGTTGCTTCGGTAGATAATTCTGCTCAGGATAGGGCTTCCCTCGATGTTAACCGACTTCCCATAGAAACACGAAATCTTCTTGCTGTTTGCAAGAAAGAGATGGAAGAGAGACAGATGAAAGAGAGAGAGACTGAGGAGAAAGTGATGGAGGACAAGGAGATGGAGGAATACCCTTCTCAAAATGGGGCTAGCTCAAAACCTTTCTCCTTTATCTATAAAAGAAGGCGTCAAAATAATCCAAGTTCTAGTTACTCTAATCAATCTGAAAGCTCAACTAGAATAAGCCAGGATCCTAACTCATCGACAACCACCACCGCTGAGATGCCATTGGAGGCATTACCGCCGAACACCAGCATAGGAAGAAAAAGAAGTTTCCTTTCTGCATTTGTGGAGTATTCTTTAATTGAATCCCTTGAACCAAAAGAGCGTCCTGCAGTTCATTTACCCGAGATGGATGCTGCTGATCTTGATTCTCTTCCTCCTGGCTGCTTAAAAATTATTCATGGGATGAAGCAGGAGATTCATAAGCTCTCTGTGGAGAAAGAGACACAGAGGTTTGAAATGATGAGTGCTCAAGCTATGATTAACATTCTTCAGTCTCGGATCGATCTTATAAACAAGGAAAATAGTGATTTGAGAAGGAGGCTCCAAGATGATTAA 1035 0.428 MNRATGKGYWKATGNDRPVRHESRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERSGIGSTQDAYVLCRVFHKNNIGPPNGQRYAPFIEDEWDDTKALIPGEGTAFETPELENRKSIGYVASVDNSAQDRASLDVNRLPIETRNLLAVCKKEMEERQMKERETEEKVMEDKEMEEYPSQNGASSKPFSFIYKRRRQNNPSSSYSNQSESSTRISQDPNSSTTTTAEMPLEALPPNTSIGRKRSFLSAFVEYSLIESLEPKERPAVHLPEMDAADLDSLPPGCLKIIHGMKQEIHKLSVEKETQRFEMMSAQAMINILQSRIDLINKENSDLRRRLQDD* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01578 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 207 - -
Pte5g01578 344 MobiDBLite consensus disorder prediction 1 22 - -
Pte5g01578 344 Coils Coil 320 344 - -
Pte5g01578 344 Gene3D NAC domain 1 82 IPR036093 GO:0003677|GO:0006355
Pte5g01578 344 MobiDBLite consensus disorder prediction 160 241 - -
Pte5g01578 344 Pfam No apical meristem (NAM) protein 2 54 IPR003441 GO:0003677|GO:0006355
Pte5g01578 344 MobiDBLite consensus disorder prediction 160 182 - -
Pte5g01578 344 Coils Coil 157 177 - -
Pte5g01578 344 MobiDBLite consensus disorder prediction 183 236 - -
Pte5g01578 344 ProSiteProfiles NAC domain profile. 1 79 IPR003441 GO:0003677|GO:0006355
Pte5g01578 344 SUPERFAMILY NAC domain 2 80 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01578 Pte-Chr5 38241416 38245228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01578 1 339 NAC Transcription Factor Family AT3G10490 41.892 2.79e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte5g01578 NAM 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01578 - - pcin:129300582 399.823