Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01575 ATGGAAGCTGCAGAGGAACTCTCCTTAGGCTCAAATCATCACATCATCAAAGGGAAGAGAACCAAACGCCAGAGGCCTCAATCTCCAATACCCTTTTCCATTACTGCAAATTCTTCAAGTGGGGATTTGCTTGACAAAGATCATTGGGATAACACCACCAATAACAACACTGGCTTCTCCCCCACCACCACAACATCTTCAGCTGAGTATTATTTTCCGGATAGTACAGAGGAGGAGGAAGACATTGCCAATTGTCTGATTCTTTTAGCCCAAGGGAAATCAAGGGAATCTTCATCAAAACAACAAGCTGAAGAAGATACTGCATTGAATTATGCTAAGTATAGCAGTAGGAAATTTTTGGAAGCCGCTGCAATAACAGGGGATGCTGCTGGCAAAGCTGGGTATTATGTCTATGAATGCAAAACATGCAACAGAACTTTCCCTTCGTTTCAAGCTCTTGGAGGGCACAGAGCAAGTCACAAGAAACCGAAGAACATAGCCATGGCTGCTGAAAATGAAAAGCAGCAACAGCAACAGCAACGGCAGCTGCAATTCATGTTGTCATCAGATGAAGAAGAATCGCAGTTCAAGAAAAACAACAACGTGTACAACCAGCCTTCGCTTCAAAATAGTAGAGGAAATTTGAATACTGACAACAACAAGAAGTCTAAGGTTCATGAATGTTCGATTTGCGGTGCTGAATTCACATCTGGGCAAGCGCTAGGCGGCCATATGCGACGGCACCGTGCCCCCATTAACGGAGCGGCAAGTACTGTACTGTCTTTGACGCCAATGGCTTTGGAGGTTGATGAGAAACAATCCAAGAAGCAGAAGGCTATAATGTCTTTAGAATTAGATCTTAATCTTCCAGCCCCAGAAGATGATCACAAGGAATCTAAGTTTGGCTTTGCGTCCAAGCAACAGCATCACCAGCAGCAACAGCAAAAACAACAGCAGCAGCAATCAAATCTTGTCTTCTCCGCCCCTGCTTTGGTGGATTGTCACTACTAA 1011 0.4431 MEAAEELSLGSNHHIIKGKRTKRQRPQSPIPFSITANSSSGDLLDKDHWDNTTNNNTGFSPTTTTSSAEYYFPDSTEEEEDIANCLILLAQGKSRESSSKQQAEEDTALNYAKYSSRKFLEAAAITGDAAGKAGYYVYECKTCNRTFPSFQALGGHRASHKKPKNIAMAAENEKQQQQQQRQLQFMLSSDEEESQFKKNNNVYNQPSLQNSRGNLNTDNNKKSKVHECSICGAEFTSGQALGGHMRRHRAPINGAASTVLSLTPMALEVDEKQSKKQKAIMSLELDLNLPAPEDDHKESKFGFASKQQHHQQQQQKQQQQQSNLVFSAPALVDCHY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01575 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 248 IPR013087 -
Pte5g01575 336 MobiDBLite consensus disorder prediction 290 304 - -
Pte5g01575 336 SMART c2h2final6 138 160 IPR013087 -
Pte5g01575 336 SMART c2h2final6 226 248 IPR013087 -
Pte5g01575 336 MobiDBLite consensus disorder prediction 1 66 - -
Pte5g01575 336 MobiDBLite consensus disorder prediction 50 66 - -
Pte5g01575 336 MobiDBLite consensus disorder prediction 26 42 - -
Pte5g01575 336 MobiDBLite consensus disorder prediction 201 222 - -
Pte5g01575 336 MobiDBLite consensus disorder prediction 201 218 - -
Pte5g01575 336 PANTHER ZINC FINGER PROTEIN ZAT5 25 314 - -
Pte5g01575 336 Gene3D Classic Zinc Finger 205 286 - -
Pte5g01575 336 Gene3D Classic Zinc Finger 115 204 - -
Pte5g01575 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Pte5g01575 336 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Pte5g01575 336 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Pte5g01575 336 MobiDBLite consensus disorder prediction 290 323 - -
Pte5g01575 336 MobiDBLite consensus disorder prediction 305 323 - -
Pte5g01575 336 Pfam C2H2-type zinc finger 137 163 - -
Pte5g01575 336 Pfam C2H2-type zinc finger 225 251 - -
Pte5g01575 336 SUPERFAMILY beta-beta-alpha zinc fingers 137 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01575 Pte-Chr5 38208543 38209553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01575 2 337 C2H2 Transcription Factor Family AT5G04390 42.708 3.03e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g01575 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01575 - - qsa:O6P43_008643 375.17