Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01573 ATGCTTACTCTCACGTGCATTATCTTAACATCCCTCCTAATCTGCATCACGCCTCCTGTCAAAGCTTCCTTCAATCTCTCTCTTCCTCACCAACATCCCTACCCTGAAGCTGTTGCTCAAGATGTTCAAAGGAGGGTCAATGAATATGTATCAAGACGGGACCTGTTTTCTTTACAGGAAAAGGGTCAGTCTTGCCTCACCGGAAACCCCATTGACGACTGCTGGCGTTGTGATCCAAACTGGGAAGCAAATCGACAAAAGTTTGCGGACTGTGGCATTGGGTTTGGAGCTAACGCCATGGGAGGCAAAGGTGGACAGATCTACATAGTTACAGACTCTTCCGATTCCGACACGGTAAACCCGAAACCCGGCACACTCCGGTTCGCTGTAATCCAAGACGAACCACTCTGGATCATATTCTCAGCTTCCATGACCATAAAGCTCAAACACGAGCTCATCTTCAACAGCTTCAAGACCGTCGACGGCCGTGGTGCTGAAGTCCACATAGTCGGCAATGGTTGTATAACCCTCCAATACGTATCTAACGTCATCATCCATGGCATTCACATCCACCATTGTAGACCTTCGGGACACACAGACATTCGGTCTAGCCCCACACACGTGGGCTGGAGAGGAAAATCCGACGGTGACGGCATCTCCATTTTCAGTTCAAGAAAACTCTGGATCGACCATTGCACACTGTCGTATTGTACGGACGGACTGATAGATGCGATAATGGGGTCCACAGGGATCACCATATCAAACAACCATTTCTCACATCACAACGAGGTGATGCTGCTGGGTCATGCGGATTCATACGAACCAGATTCGGGTATGCAGGTAACCATTGCGTTTAATCACTTCGGAGAAGCGCTGGTGCAGCGTATGCCACGGTGTAGAAGAGGGTATATTCATGTGGTGAACAATGATTTCACGCAATGGCAGTCGTATGCAATTGGGGGCAGTGCTAATCCCACCATTAACAGTCAGGGCAATCGATACACTGCTCCGGCTAATCCTGATTCTAAGGAGGTGACAAAGCGCCTGGACACCGACCAGATGCAATGGGTGGGATGGAATTGGAGGACAGAAGGTGACATAATGGTGAATGGTGCTTTCTTTGTGCCCTCAGGTCAAGGGCTGAGTACTCAGTATGCCAGAGCATCCAGCGTTGAACCCAAGTCTGCTTCTTTGATTCACCAGCTCACCATGAATGCTGGTGTCTTTGGTGATCCCAGGAATGACAATGGGAACGTTCAATTTCCCGGTGGAAGCGTCGGGACCAGTACCGGTGACAATGGCGATGCTGGTGGTGACTTCTTTGGAATGGTATTCGGTGGTGGAGGAATGAACACTGCAGCTCCATCTTCCACGTCTAGGACTTTAATTCTTTTCTCTTTTTTGATTATTTTGATTTTGCACACTATCACAAACCATGTTGCCTTCATGTCATTACAATTTCTTTATGATACCTACATATAA 1482 0.4811 MLTLTCIILTSLLICITPPVKASFNLSLPHQHPYPEAVAQDVQRRVNEYVSRRDLFSLQEKGQSCLTGNPIDDCWRCDPNWEANRQKFADCGIGFGANAMGGKGGQIYIVTDSSDSDTVNPKPGTLRFAVIQDEPLWIIFSASMTIKLKHELIFNSFKTVDGRGAEVHIVGNGCITLQYVSNVIIHGIHIHHCRPSGHTDIRSSPTHVGWRGKSDGDGISIFSSRKLWIDHCTLSYCTDGLIDAIMGSTGITISNNHFSHHNEVMLLGHADSYEPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTQWQSYAIGGSANPTINSQGNRYTAPANPDSKEVTKRLDTDQMQWVGWNWRTEGDIMVNGAFFVPSGQGLSTQYARASSVEPKSASLIHQLTMNAGVFGDPRNDNGNVQFPGGSVGTSTGDNGDAGGDFFGMVFGGGGMNTAAPSSTSRTLILFSFLIILILHTITNHVAFMSLQFLYDTYI* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01573 493 Pfam Pectate lyase 149 332 IPR002022 -
Pte5g01573 493 SUPERFAMILY Pectin lyase-like 69 408 IPR011050 -
Pte5g01573 493 SMART amb_all 143 340 IPR002022 -
Pte5g01573 493 FunFam Pectate lyase 68 410 - -
Pte5g01573 493 Gene3D - 68 410 IPR012334 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Pte5g01573 493 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Pte5g01573 493 PANTHER PECTATE LYASE 18-RELATED 33 409 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01573 Pte-Chr5 38174517 38179514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01573 1 475 Polysaccharide Lyase AT3G53190 63.958 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01573 K01728 - qsa:O6P43_008646 724.161