Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01569 ATGGCCGGTAAGGAAGAAAATCGAATTTTTGTTGGAGGGTTGTCTTGGGATGTCACAGAACGACAGCTTGAGAATGCTTTTGCTCGTTACGGGAAAATTATTGAATGTCAGATTATGCTGGAAAGAGATACAGGTCGTCCAAGAGGATTTGGGTTTATAACATTTGCAGATCATAGAGGAATGGAGGATGCAATAAAAGAAATGCATGGACGAGAATTGGGTGATCGAGCCATCTCTGTAAATAGAGCTGAGCCAAAATTGGTTTCAGATGACCTTGACCATGGTTACCGTGGAGGCTACGCATCTGGTGGTCGAGGAAGCTATGGGGCTGATAGGTCTTCTGGACAAGATGACTGCTTTAGGTGTGGACGCCCTGGGCACTGGGCTCGAGATTGCCCATTATCAGGTGGCCGTGGAGGTGGGGGAGGGTCATTTTCTTCACGCTCTAGGTTTGGAGGAGCTGGAAGCCACAGTGACCGCTTTCCTGGTGAGCGTGACAGGTTCATTGATGATCGCTATGATGCGGGACGGTATGGTTACAGGGATCGTTTTGATGTCAGAGATCAAAAGTATGGAACTCGTGATCGTTATGGTAGTGACAGGTACCCTGCTGCTGGAGATCATTTTCCAAGTGATAGATATGGCAGTTCTGATCGCTACCCTCAAAATGGCTATGGCAAAGATAGAGGTTATGATAGGTATGGGGGACCAAGAGGTGGCAGTGATAGATATGGGGCAAGCTTGCCACCACGCGAGGAACCAAGGAATTATAGGAGTAGGCCTGGTCCTTATGACCGTCCTACTAGGGGTGGCCGTCCATCTTTCGATCGCTACTGA 837 0.4851 MAGKEENRIFVGGLSWDVTERQLENAFARYGKIIECQIMLERDTGRPRGFGFITFADHRGMEDAIKEMHGRELGDRAISVNRAEPKLVSDDLDHGYRGGYASGGRGSYGADRSSGQDDCFRCGRPGHWARDCPLSGGRGGGGGSFSSRSRFGGAGSHSDRFPGERDRFIDDRYDAGRYGYRDRFDVRDQKYGTRDRYGSDRYPAAGDHFPSDRYGSSDRYPQNGYGKDRGYDRYGGPRGGSDRYGASLPPREEPRNYRSRPGPYDRPTRGGRPSFDRY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01569 278 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Pte5g01569 278 Gene3D - 1 115 IPR012677 -
Pte5g01569 278 FunFam glycine-rich RNA-binding protein RZ1C 1 117 - -
Pte5g01569 278 MobiDBLite consensus disorder prediction 131 166 - -
Pte5g01569 278 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Pte5g01569 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pte5g01569 278 SUPERFAMILY Retrovirus zinc finger-like domains 104 137 IPR036875 GO:0003676|GO:0008270
Pte5g01569 278 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pte5g01569 278 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Pte5g01569 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pte5g01569 278 MobiDBLite consensus disorder prediction 192 278 - -
Pte5g01569 278 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 275 - -
Pte5g01569 278 Gene3D - 116 155 - -
Pte5g01569 278 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01569 Pte-Chr5 38123877 38128706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01569 9 86 C2H2 Transcription Factor Family AT2G19380 39.744 3.14e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01569 - - gmx:100809519 386.341