Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01565 ATGGATTGTCTTCCCTACAGCGATGTAGATTCCAGCTTGAGAAAAATGGCTGGTCGGGCTGAAGGTTTTGGTCGCTTCGCCATTGGAGGCCTCAATGGACAACTCTCTTGCGTCACAACACTTGCAGATGATGGTCCCGGATCTCTTCGCGACTGTTGTCGCAGAAAAGAGCCTCTGTGGATTGTTTTTGAGGTTTCAGGCACAATTCACCTAAACTCATACTTGAGCGTCTGTTCGCACAAGACAATTGATGGTAGAGGACAGAGGATAAAGCTTACAGGGAAGGGCTTGAGGCTTAAGGAATGTGAAAATATTATCATCTGCAACCTTGAGTTTGAAGGTGGTACGGGTCACGATGTTGATGGCATCCAAATCAAACCGAATTCTCGGAACATTTGGATTGACCGTTGCAGTCTTCGAGATTATGATGATGGACTTATTGATATTACAAGACAAAGCACGGATATAACTGTGTCTAGATGTTATTTTGCACAACATGACAAGACCATGCTGATTGGAGCTGATCCATCTCACACTGAGGATAGATGCATTCGGGTGACAATTCATCATTGCTTCTTTGATGGCACAACACAGAGACAGCCCCGCGTGAGATATGGGAAAGTGCATCTTTACAATAATTACACCAGAAATTGGGGTATATATGCTGTTTGTGCAAGTGTGGAGTCGCAGGTAATAGATTACAATAATGCTTACGTCTTCTTTTTCTACTGGCATTTCATTTCTAGAAATATAAGTTTAATTTGTGAAAGATCCTCGAGGATACATACAAATGCTACTCACTACTCTCAACAGATATATTCTCAATGCAACATATATGAAGCGGGACCAAAGAAAAAGACTTTCGAGTTTTATATGGAGAAGGCCGCAGATACAGAAAAGGTGCAATCTGGCTCTATAAGATCTGAAGGGGACTTTTTCCTTAATGGCGCTGAGTCTTTTCCATCGGTAGAATGCAATGAAGAATCCTTGTTCCATCCTAGTGAACACTACCCAGTTTGGACAGTGGGAGTAGCTTCTAATTCTCTGAAAGAAATCATTCAAATCAACGCTGGTTGGCAATCTATCAGTAGGCCCCCATTGGATTAA 1107 0.4228 MDCLPYSDVDSSLRKMAGRAEGFGRFAIGGLNGQLSCVTTLADDGPGSLRDCCRRKEPLWIVFEVSGTIHLNSYLSVCSHKTIDGRGQRIKLTGKGLRLKECENIIICNLEFEGGTGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHTEDRCIRVTIHHCFFDGTTQRQPRVRYGKVHLYNNYTRNWGIYAVCASVESQVIDYNNAYVFFFYWHFISRNISLICERSSRIHTNATHYSQQIYSQCNIYEAGPKKKTFEFYMEKAADTEKVQSGSIRSEGDFFLNGAESFPSVECNEESLFHPSEHYPVWTVGVASNSLKEIIQINAGWQSISRPPLD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01565 368 PANTHER PECTATE LYASE 18-RELATED 7 238 IPR045032 GO:0030570
Pte5g01565 368 SMART amb_all 46 244 IPR002022 -
Pte5g01565 368 Pfam Pectate lyase 75 232 IPR002022 -
Pte5g01565 368 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Pte5g01565 368 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Pte5g01565 368 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Pte5g01565 368 SUPERFAMILY Pectin lyase-like 17 362 IPR011050 -
Pte5g01565 368 Gene3D - 5 358 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01565 Pte-Chr5 38096633 38099064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01565 41 365 Polysaccharide Lyase AT3G55140 70.462 1.92e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01565 K01728 - qsu:112015819 541.962