Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01557 ATGGGTAATGTTGAAATTCCTGAATGGCTGAAAGGGTTACCTTTGGCACCGGAATTCCGCCCGACCGACACTGAATTTGCTGACCCAATTGCTTATATATCGAAAATAGAAAAGGAAGCTAGTGCTTTTGGTATATGCAAGATTATCCCACCATTGCCAAAACCTTCAAAAAGATATGTTTTCTCCAATTTGAATAAGTCACTATTGAAGTGCCCGGAATTGGGTTCTGATGCTTGTTCCAATGGTATTAGTAGTTCATCAAAAACGGGGTCCGGGGAAAGCTGTAATAATGAAGTTGGAGTGCGGGCAGTATTTACCACTAGACAGCAAGAACTAGGGCAGAGTGTGAAAAGAACAAAGGGGGCAGCTCCAAATCCAAATCTGGCTGTTCATAAGCAAGTATGGCAAAGTGGGGAGTTTTATACATTGGAACAGTTCGAGTCAAAGTCAAAAGCTTTTGCAAAGAGCATGTTAGGTATGTTTAAGGAGGTTTCTCCATTAGTGATAGAGATGCTTTTCTGGAAGGCAGCTTCTGAAAAGCCCATATATGTGGAGTATGCCAATGATGTGCCTGGCTCTGCATTTGGAGCTTCTCGTGGACCATTTCGTTATTTTCATAGACTGCGAAGAAAAAGGGCATTTTACAGGAGATCTAGTACAACTGATTGCAGGACAAAAGAGACAGAGAGCATTAGCAATTTTCAGTCTGGTGATGGCAAAATTAGTTCTGCAAAATGTGAAACAAGTGTGGATACAGGGGCGTCAAGTTCAAAATTATCTTCTGCTTCCGGAACAATGCAATCATCTCAGGAAAAAAGTTCTGAAGCTGATGATGAGATGGAAGGTACTGCAGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTACAAGGCATTGCACGATCACCTGGTTCACTTACACGTTTCATGCCTGATGATATTCCTGGTGTTACATCTCCTATGGTCTACATTGGCATGCTCTTTAGTTGGTTCGCTTGGCATGTAGAAGATCATGAACTTCACAGCATGAATTTTCTCCATACTGGCTCAGCAAAGACTTGGTATGCTGTTCCTGGGGAGTATGCATATGCCTTTGAGGAAGTTGTCAGATCTGATGTTTATGGTGGTGATGTTGATCACTTGGCTGCGCTTACACTCTTGGGGGAGAAAACAACACTTTTATCACCTGAGATGGTGGTTGCATCAGGGATTCCATGTTGCAGGTTAATACAATACCCTGGGGAATATGTTGTTACTTTTCCAAGGGCTTACCATGTAGGATTCAGCCATGGTTTTAATTGTGGAGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAAAGTAGCCAAGGAAGCTGCTATTCGTAGAGCTGCCATGAACTATCTTCCCATGCTGTCACACCAGCAGCTATTGTACTTATTGTCAATGTCATTTATTTCGAGAGTACCGAGATCTTTATTACCAGGTGTGCGTAGTTCACGGCTGAGAGATCGTCAGAAGGAAGAAAGGGAGTTTAGGGTAAAGAAGGCCTTTATAGAAGATATAGTGAAACAGAATGAAATGGTATCTACCCTTGGAAAAGAGTCTTCCTCTCGTGCAGTTTTATGGAATATAGATTTACTACCATATGTGAATAAAGAGTGTCAATTGCCTGGGCCTGATTCTATTGGACGACCCTTAGAAAATGTGGCCAATAAGGGCTTCAATTATGAGAATGAACAAAACCATCTCTTGTTTGACATGAACTTGTACATGGAAAATCTACATGATTTAGAATTGGGTGGTGATGATTTGCCTTTTGACTTTCAAATTGATTCTGGAACACTGGAATGTGTTGGATGTGGAATACTCGGTTTTCCATTTATGGCTATCATACAACCATCTGATAGAGCATCAAGGGAGCTTCTGCCTAAAGATGATCTAATTCAAGAAGATCCACAAATGACTCGCAATTTGTCTTTGGATCCAATGATCAACGTTCAAGACCCTAAATCAGAGGATCTGTCTATGCTGTCAAAAAATATGTCTAGTCAGGTGTGGAACACTTCCAACAGATTTTTAAGGCCTCGGATATTCTGCTTGGAGCATGCTATTCAAATTATGGAGTTGTTAAAGTGTAAAGGTGGAGCAAAACTTCTTGTGGTTTGCCATTCAGATTATGAGAGAATAAAAATGCATGCCTCTAGTGTCGCAGAAGAGATTGGTTGTACTTTCGATTGTAAGAAAATTCCACTGGATACCGCATCTACAGATGATTTGAGCTTAATAGATCTGGCAATTGATGGGGAAGAACTGAATGATTCTGCTGAAGACTGGACTTCAAGACTTGGTATTAACTTGCGTTATTTTGTTAGGGCAAGAAAGAACTTAGAGTTCAAGCAAAATCAGCTTATATTATCTTTGTCTGGAGTACTCTCTGAAAGAAATACTAGTTCTGGTCTCCTGTCTATCAATTGGCAGTCACGAAGATCTCGCACCAGAAGATTGAAGCATCCAACCAAAGGATGTGAAAATTTTCTAGAAGAGGATGATATGTTGGACAGATATTCAGGTTATGTTTTTGTTGAAAAAGAGAAAGAACTTCTTCAATATTCTAGAAGAAAATCCAAGTTAAAACCAGGAAATAATTCAGAAGCAAAAATTGGCTCCAAATCCCTAAGGAAAGGTGCTTTGAAAGATGTGTCAACCACTGGGGCTGTTGGTCATCATGATCAGTTATGTGGAAATAAAGTTGCAGTTGTAAAGTTAGTAGATCATGCCTTAGTAGGTTCATTACCTTCTGGAGTGCCTGAAGGTCATGTACAGGTTCCTGAAGTAGTCATCACTACTGCTGTGACTTCTGTTGATTCACAATCAGCAAAGTGCCATGCTTTCCCCCTACCTGTTGTTGAATACTTTGATGTGAACAATAACGGTCACACTCTGCTAGAGTCCGAGACAAATCGGGAAGATTCTTTAATCACAAATCCTGCAAAAGTGAATTTGGAGATTGATAAAAGGCTTACCAAAGAGAAGGATGTTTCACTTGCCAATGAATATTCCAATTCACCTGTTGGAACTGATGAGAACTCCAGTAGGCCAGCCAAACATGAAGATGAGGTAGCACTCAGTATGCAAATATGTATGATGGTGTCCGAAGATGAAGTCCATCAAGGAACCCTGGCTAACAGAAATTCCGTGGTAGTTTCGTCAGTGAATCAAATGATTAATCAGGATAGACTTGCCTCAATAGGGCAAAGTTCTGCAGGTCCTGGAGAGATGTGTGCAGTTGAAAATAACTTAGAGAATGTAGAGTTGAAAAATTCAACTGGTAGTGAACAAGAATCTATTTCAAGTCATGGTCTAAGAACTGATGACCATGATGTACAAATGGACGAAACTTCTGAAGTTCCCAAAGAGCTTGGCACTATTGCAAGCTTTCAAAGCCATGTAACTTCAGTCAATAAATTGCAGCTATCTACAAATGGTAACCCCACAAAGCATGTTGTCTCCACAACTGTCCAACTTGAAAAGATAAATCAGCCGGTACATCCTTCAGTAAAACAACAATCAGAAGTTCTAAATGGAACTGTTGCTGATACTGATAAGCTTAAGACAGCAGATATTAAGAAAATTGAGGAACTGACGTGTAATTTTGATACAGGAGGAGAGAGTGAAAGTATATCTTCTTTAGAGGCATCTGAAATTTCATTGGATGGCTGTGTGAAGGGAACATTAACAGATGATGTTGTTTCATGTAAAATTTTGCAGCAGAGAAGTTTATCCACAATCGTGACTGCCAAGGAACTTGGGTCTGGCACTGATGCATTATCAAAGGAGTCAACTGTCTCTGTACAACAACGTTCCTCAGATCAGGGAGAGACCTCTGGCACCAACGATCAACATGGAGCTCATGAAAGCATGTTGGATGACAATGTGGAGCAGGAAATCACCAAATTAAACTCCCCAGACCTTGAGAAAGTCGAGACTAAACAAGGGAAAAGAAAAAGGGAAGTGGATTGGATAAGAAAGCTTAATGATGATTGCAATGGATTTATCAGGAGTCCGTGCGAAGGTTTGAGACCAAGAGCTGGGAAAGGAGCAACTGGTAGACATGATAGTAACACTGCCACCAATACCAATGAAGACCAAATTTTGAAGAAGGCAAGAAGAGTTACAGAGATTCAAGTCCCTATTAAAAATAAGAAAGACAAGAGTGGAGGATCCCACAAGTGCGATCTTGAAGGTTGCAGCATGAGTTTCAAGACAAAGGCAGAGTTATCGATGCACAAACGTAATATATGCCCATATGAAGGATGTGGGAAGAGATTCAACTCCCATAGATATGCATTGGTCCATCAGCGAGTTCATGATGACGAGAGACCCCTTAAATGCCCATGGAAAGGTTGCTCCATGTCGTTCAAGTGGGCATGGGCTAGGACTGAGCACATTCGTGTGCATACTGGTGAGAAACCGTATAAGTGCAAAGTTGAGGGATGTGGCCGTTCTTTCAGGTTTGTGTCTGATTATAGCCGGCATAGACGAAGGACTGGGCACTACATAGACTCACCTTCCTGA 4554 0.4102 MGNVEIPEWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKSLLKCPELGSDACSNGISSSSKTGSGESCNNEVGVRAVFTTRQQELGQSVKRTKGAAPNPNLAVHKQVWQSGEFYTLEQFESKSKAFAKSMLGMFKEVSPLVIEMLFWKAASEKPIYVEYANDVPGSAFGASRGPFRYFHRLRRKRAFYRRSSTTDCRTKETESISNFQSGDGKISSAKCETSVDTGASSSKLSSASGTMQSSQEKSSEADDEMEGTAGWKLSNSPWNLQGIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSAKTWYAVPGEYAYAFEEVVRSDVYGGDVDHLAALTLLGEKTTLLSPEMVVASGIPCCRLIQYPGEYVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKVAKEAAIRRAAMNYLPMLSHQQLLYLLSMSFISRVPRSLLPGVRSSRLRDRQKEEREFRVKKAFIEDIVKQNEMVSTLGKESSSRAVLWNIDLLPYVNKECQLPGPDSIGRPLENVANKGFNYENEQNHLLFDMNLYMENLHDLELGGDDLPFDFQIDSGTLECVGCGILGFPFMAIIQPSDRASRELLPKDDLIQEDPQMTRNLSLDPMINVQDPKSEDLSMLSKNMSSQVWNTSNRFLRPRIFCLEHAIQIMELLKCKGGAKLLVVCHSDYERIKMHASSVAEEIGCTFDCKKIPLDTASTDDLSLIDLAIDGEELNDSAEDWTSRLGINLRYFVRARKNLEFKQNQLILSLSGVLSERNTSSGLLSINWQSRRSRTRRLKHPTKGCENFLEEDDMLDRYSGYVFVEKEKELLQYSRRKSKLKPGNNSEAKIGSKSLRKGALKDVSTTGAVGHHDQLCGNKVAVVKLVDHALVGSLPSGVPEGHVQVPEVVITTAVTSVDSQSAKCHAFPLPVVEYFDVNNNGHTLLESETNREDSLITNPAKVNLEIDKRLTKEKDVSLANEYSNSPVGTDENSSRPAKHEDEVALSMQICMMVSEDEVHQGTLANRNSVVVSSVNQMINQDRLASIGQSSAGPGEMCAVENNLENVELKNSTGSEQESISSHGLRTDDHDVQMDETSEVPKELGTIASFQSHVTSVNKLQLSTNGNPTKHVVSTTVQLEKINQPVHPSVKQQSEVLNGTVADTDKLKTADIKKIEELTCNFDTGGESESISSLEASEISLDGCVKGTLTDDVVSCKILQQRSLSTIVTAKELGSGTDALSKESTVSVQQRSSDQGETSGTNDQHGAHESMLDDNVEQEITKLNSPDLEKVETKQGKRKREVDWIRKLNDDCNGFIRSPCEGLRPRAGKGATGRHDSNTATNTNEDQILKKARRVTEIQVPIKNKKDKSGGSHKCDLEGCSMSFKTKAELSMHKRNICPYEGCGKRFNSHRYALVHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYKCKVEGCGRSFRFVSDYSRHRRRTGHYIDSPS* 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01557 1517 MobiDBLite consensus disorder prediction 1007 1022 - -
Pte5g01557 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 1487 1511 IPR013087 -
Pte5g01557 1517 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1451 - -
Pte5g01557 1517 MobiDBLite consensus disorder prediction 253 289 - -
Pte5g01557 1517 ProSiteProfiles JmjC domain profile. 290 456 IPR003347 -
Pte5g01557 1517 MobiDBLite consensus disorder prediction 1007 1030 - -
Pte5g01557 1517 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Pte5g01557 1517 SUPERFAMILY beta-beta-alpha zinc fingers 1465 1508 IPR036236 -
Pte5g01557 1517 Pfam Zinc finger, C2H2 type 1485 1511 IPR013087 -
Pte5g01557 1517 FunFam Probable lysine-specific demethylase ELF6 1452 1481 - -
Pte5g01557 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 1455 1484 IPR013087 -
Pte5g01557 1517 SMART cupin_9 287 456 IPR003347 -
Pte5g01557 1517 Pfam jmjN domain 17 50 IPR003349 -
Pte5g01557 1517 SMART JmjN_1 15 55 IPR003349 -
Pte5g01557 1517 MobiDBLite consensus disorder prediction 1267 1295 - -
Pte5g01557 1517 SUPERFAMILY Clavaminate synthase-like 290 454 - -
Pte5g01557 1517 MobiDBLite consensus disorder prediction 253 271 - -
Pte5g01557 1517 SUPERFAMILY beta-beta-alpha zinc fingers 1425 1462 IPR036236 -
Pte5g01557 1517 MobiDBLite consensus disorder prediction 1352 1371 - -
Pte5g01557 1517 Pfam JmjC domain, hydroxylase 320 439 IPR003347 -
Pte5g01557 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 1457 1479 IPR013087 -
Pte5g01557 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 1485 1516 IPR013087 -
Pte5g01557 1517 Gene3D Cupin 9 460 - -
Pte5g01557 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 1425 1454 IPR013087 -
Pte5g01557 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 1427 1449 IPR013087 -
Pte5g01557 1517 SMART c2h2final6 1455 1479 IPR013087 -
Pte5g01557 1517 SMART c2h2final6 1485 1511 IPR013087 -
Pte5g01557 1517 SMART c2h2final6 1425 1449 IPR013087 -
Pte5g01557 1517 SMART c2h2final6 1402 1424 IPR013087 -
Pte5g01557 1517 MobiDBLite consensus disorder prediction 1267 1297 - -
Pte5g01557 1517 Gene3D Classic Zinc Finger 1484 1512 - -
Pte5g01557 1517 Gene3D Classic Zinc Finger 1423 1452 - -
Pte5g01557 1517 Gene3D Classic Zinc Finger 1453 1483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01557 Pte-Chr5 38027255 38037246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01557 1 908 C2H2 Transcription Factor Family AT5G04240 55.102 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g01557 JmjC 8.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01557 - - qsa:O6P43_005023 1481.46