Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01553 ATGTGGCCTTACTTGGAAAAGGCAATTTGTAGCACAATTAGAAGTGTGGCAGAACCTTTAATGGCAGAATACATTGGGAAGTATCAAATTAAAGCAATTGGGTTTTCAAAAGTGAGCCTTGGAACTCTCCCTCCTACTATTCATGGTCTTAAAGTCTATGAGACTAATGAAAATGAATTAGTACTGGAGCCAGTAATCAAATGGGCTGGCAATCCGAACGTAGTTTTAGTGTTGCATTTGCTGTCTGTAAGAATAACGTTTCAGTTGGTAGATTTGCAGCTATTTGCTTCACCAAGGATAACTTTGAAACCCCTTGTTCCCACATTTCCATGTTTTGGAAACGTCATAGTATCTTTGTTGGAGAAGCCCCATGTAGACTTTGGACTGAAAATACTTGGAGGGGACATCATGTCAGTACCTGGCCTCTATGGATATGTTCAGGAGACAATTAAAAAGCAAATTGCAATTCTCTGTCTCTGGCCCCAAACTCTTCAAATTCCTATCCTTGATCCCTTAATGGTGTCCACGAAGAAGCCTGTTGGGATACTGCATGTGAACGTGGTTCGAGCGCTGAAGCTTCTGAAGATGGACTTCTTGGGAACATCTGATCCTTATGTCAAATTAAGCTTGACAGGTGACAGGTTGCCTGCCAAAAAAACAACCATCAAGATGAAAAATTTAAATCCTGAATGGAATGAGAAGTTCAAGCTTATTGTGAAGGATCCCGAATCCCAAGTTCTTAAACTTCAAGTCTATGATTGGGACAAGGTCGGCGGACATGATAGATTGGGAGTGCAAGCAGTCCCTCTTACATGGCTAATACCATATAAAACAAAAGAATTTACGCTTGATTTACTCAAGGATGCAGATGATAGTGACAGCAAGAAAAGGGGACAACTTGTGGTTGAGCTGACTTTTGCTCCTTTTAAAGAAGACAGTAGCAAATTCACCAGTAAATATGAAAGAATTGGGACAAAGGAAAGTGAAACCAGTTTTTCATCTGATAGTGATATCCAAGGAGCAGGTTTACTTTCAGTAATGATCCAAGGAGCTAAAGATGTAGAGGGTGAGCTTCATAACAATCCTTATGCTTTAGTCCTATTTAGAGGAGAAAAGAAAAAGACAAAGATGATACCAAAAACTCGCGATCCACACTGGAATGAAGAATTTGAGTTCATGCTTGAGGAGCCTCCTGTAAATGACAAGATATTCGTTGAGGTTGTAAGCAAATGGGCAAAGAACAGAGTTTTGTCAAAGATCTTGAGTTTTCTATTGAAGGAGTCATTAGGATTTGTGGAGATTAATCTAGCTGATGTTGTTCACAATGGTCGTATCAATCACAAGTATCATCTCACAAACTCAAAGAATGGACAAATACATGTGGACATAAGATGGAAAGTGATTTGA 1407 0.3945 MWPYLEKAICSTIRSVAEPLMAEYIGKYQIKAIGFSKVSLGTLPPTIHGLKVYETNENELVLEPVIKWAGNPNVVLVLHLLSVRITFQLVDLQLFASPRITLKPLVPTFPCFGNVIVSLLEKPHVDFGLKILGGDIMSVPGLYGYVQETIKKQIAILCLWPQTLQIPILDPLMVSTKKPVGILHVNVVRALKLLKMDFLGTSDPYVKLSLTGDRLPAKKTTIKMKNLNPEWNEKFKLIVKDPESQVLKLQVYDWDKVGGHDRLGVQAVPLTWLIPYKTKEFTLDLLKDADDSDSKKRGQLVVELTFAPFKEDSSKFTSKYERIGTKESETSFSSDSDIQGAGLLSVMIQGAKDVEGELHNNPYALVLFRGEKKKTKMIPKTRDPHWNEEFEFMLEEPPVNDKIFVEVVSKWAKNRVLSKILSFLLKESLGFVEINLADVVHNGRINHKYHLTNSKNGQIHVDIRWKVI* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01553 468 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 1 168 IPR039010 -
Pte5g01553 468 PRINTS C2 domain signature 198 210 IPR000008 -
Pte5g01553 468 PRINTS C2 domain signature 225 238 IPR000008 -
Pte5g01553 468 PRINTS C2 domain signature 247 255 IPR000008 -
Pte5g01553 468 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 341 465 IPR035892 -
Pte5g01553 468 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 309 IPR035892 -
Pte5g01553 468 FunFam Synaptotagmin-2 isoform A 176 328 - -
Pte5g01553 468 ProSiteProfiles C2 domain profile. 160 283 IPR000008 -
Pte5g01553 468 CDD C2 344 443 - -
Pte5g01553 468 Pfam C2 domain 343 451 IPR000008 -
Pte5g01553 468 Pfam C2 domain 181 271 IPR000008 -
Pte5g01553 468 ProSiteProfiles C2 domain profile. 324 449 IPR000008 -
Pte5g01553 468 SMART C2_3c 182 282 IPR000008 -
Pte5g01553 468 SMART C2_3c 343 448 IPR000008 -
Pte5g01553 468 CDD SMP_SYT 1 168 - -
Pte5g01553 468 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 465 IPR045050 GO:0008289
Pte5g01553 468 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 169 IPR031468 GO:0008289
Pte5g01553 468 Gene3D C2 domain 343 468 IPR035892 -
Pte5g01553 468 Gene3D C2 domain 176 336 IPR035892 -
Pte5g01553 468 CDD C2 183 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01553 Pte-Chr5 37936707 37941221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01553 180 274 C2H2 Transcription Factor Family AT4G05330 38.542 8.48e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01553 - - qsa:O6P43_008637 686.797