Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01552 ATGATCGGACCAAGTTGCATGGATGAGATTGACTGTGGCAGCTTCTTCGACCACATCGACGATCTCCTCGACTTCCCAGCTGACGACGTCGATATCCCTTTACCCACTGTCGGCAATTGTGACTCGTGGTCTATTTGGAACCCCGAGTGTGACTCTGTTTTCTCTAACAACAGCCCCTCCGACTTCTCAGCTGACCTCTCTGTTCCGTATGAAGACATTGTCCAGTTGGAATGGATGTCGAAGTTTGTGGAGGATTCTTTTGAGGGTGGGAGTCTTACAATGAAGAAAGAGGATGTCTCTTCTGATACCAATAAGGAGGAATTAGAGCATCAGCGATTCCAGACATCTAGCCCTGTTTCGGTGCTTGAAAGCAGTAGCTCCTCCTCTGGGGAGAAGTCTGCAGGTCATCGCCCTGATGTTCTTGCTGCACGGCATTGCAGACGAGCAAGTAGTAAGCGGCAATGCCCTGAGACTTTGGTGCCGCGTCCAGCTATGCAGCTCATTTCCCCAGCCTCCTCTATTGGTGAAACACCACAGCTGTTCGTCTCCCCCAAAGCATCTTCTGATTCAGAGAATTTTGCGGAGTCTCGCCCCATCATTGTAAAGATACCAAAACAAGTTTCTGCAGAGCACAAGAAGAAGAAGAAAAGAAAATTCTCAGTACCTCTAGTTCCAGAAGAGACAAACCAAAATTCCCCTTCACAGGCTGTGAGGAAATGCCTGCATTGCGAGATTACCAAGACTCCGCAATGGAGGGCAGGGCCGATGGGCCCTAAAACCCTCTGCAATGCATGTGGAGTCCGATACAAGTCCGGCCGACTTTTCCCTGAATACCGCCCTGCAGCCAGTCCAACCTTTGCCCCGTCCATTCACTCCAACTCTCATAAGAAAGTCCTGGAAATGAGGAACAAGATCAAATACAATGATAGTCTTGATGCAAATGAAACAAAATCAAGTGATTTCCCAGAACTTATTCCAAACACCAATAGCAGCCTGACTCTCGATTACATGTAA 1014 0.4832 MIGPSCMDEIDCGSFFDHIDDLLDFPADDVDIPLPTVGNCDSWSIWNPECDSVFSNNSPSDFSADLSVPYEDIVQLEWMSKFVEDSFEGGSLTMKKEDVSSDTNKEELEHQRFQTSSPVSVLESSSSSSGEKSAGHRPDVLAARHCRRASSKRQCPETLVPRPAMQLISPASSIGETPQLFVSPKASSDSENFAESRPIIVKIPKQVSAEHKKKKKRKFSVPLVPEETNQNSPSQAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFAPSIHSNSHKKVLEMRNKIKYNDSLDANETKSSDFPELIPNTNSSLTLDYM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01552 337 CDD ZnF_GATA 239 296 IPR000679 GO:0006355|GO:0043565
Pte5g01552 337 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Pte5g01552 337 Gene3D - 234 284 IPR013088 GO:0006355|GO:0008270
Pte5g01552 337 PANTHER GATA TRANSCRIPTION FACTOR 18 306 - -
Pte5g01552 337 FunFam GATA transcription factor 228 317 - -
Pte5g01552 337 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Pte5g01552 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 238 297 - -
Pte5g01552 337 MobiDBLite consensus disorder prediction 93 138 - -
Pte5g01552 337 PIRSF Txn_fac_GATA_plant 3 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte5g01552 337 MobiDBLite consensus disorder prediction 98 112 - -
Pte5g01552 337 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Pte5g01552 337 MobiDBLite consensus disorder prediction 113 133 - -
Pte5g01552 337 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01552 Pte-Chr5 37883120 37886026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01552 194 335 C2C2-Gata Transcription Factor Family AT3G54810 52.532 2.42e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte5g01552 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01552 - - qsa:O6P43_005032 432.95