Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01551 ATGGATTCTCTCAAAAGGAACTCAGGGAATAGTGTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGGTTGGTTCAAATTCCGCCCACCAACTCCAAAGTCATTTACTTTCCTCAAGGCCACGCAGAACATGCTCTTGAGAAAATAGATTGTGGGAATTCTAGGATTCCCAGTCTTATACCTTGCAAGTTATCTGCTATAACATACATGGCAGATCCTCAAACAGATGAGGTGTATGTGAAAATGAGGCTGACACCTCTGAGAGACAGTGAAGTCACTCATGAGGATGATTTTCTCGTGGGGAACTTCGAATTTGAGTGTCAAGAGAAGCCTGCATCGTTTGCAAAGACATTGACACAGTCTGATGCTAACAATGGTGGCGGATTTTCTGTGCCTCGTTACTGTGCAGAAACTATATTCCCACGCTTGGATTATACAGCTGAGCCCCCTGTTCAAACCATTATTGCAAAGGATATGCATGGACAGAACTGGAAATTTAGGCACATTTATAGAGGCACACCCCGTCGTCATCTTTTGACGACGGGGTGGAGTAATTTCGTGATTCATAAGAAACTTGTTGCTGGGGACTCCATAGTGTTTCTTAGGGCAGAGAATGGAGATCTCTGTATTGGGATCAGGAGAGCTAGGAAAGGAATTGGGGGTGGAACTGAGTACTCATATGGTTGGAAGCAAGGAGCTGAGAATGGGAAAAATGCATTAACCAGAAACTGCAATGTGGATATCAGGGGAAGAGTGACAGCTGAGTCTGTCATTCAAGCTGTGACACTTGCCGTTAATGGCAAGCCCTTTGAGGTTGTGTACTATCCTAGTGCTAGCTCCCCAGAATTTTGTGTTAGGGGCTCTGCTGTGAGAGCTGCAATGCAATTCAAGTGGTCTCCTGGGATGAGGTTTAAAATGCCTTTTGAAACTGAGGATTCGAGTCGGATTAGCTGGTTTATGGGCACAATATCTTCTGTTAAGGAAGCCGATCCAAGTCGTTGGCCAGGTTCTCCATGGCGCCTGCTAGAGGTAGAATGGGATGAGCCAGATTTACTTCAGAATGTGAAGAGAGTCAATCCATGGTTGGTTGAATTAGTCTCGACCATTCCAACCCATCATCATCCCTCTTCCTTCTCGCCACCAGCAAAGAAATTTCGACTTCCACCCCAACAGGATGTTCCGGTCATGAATCAAATTCCGGCGACATCATTGGCATCCAATGTTACCAATCACAGCAACCCCTTCTGTAGTGTTCAGGATAACACATCTACAGGCATCCAGGGAGTCAGGCATGCACCAGATTTTAGTCTCACCAAATTGCTGACAGATGATTTTTCTTTTGGATTTTCACCCCTTGATCGTGCTGTCCTGCCTTCTACACATTTAAGTCGAAGCATTTTAGACAAGAAAAATGACAATACTTTTTCCTTTCTGACTGCTAAATATCCTAATGAATGTTTGAAGACACCGAATGAAACAACCACATCACATATCTTTTTGTTTGGTCAGCTCATTCACACTGAACAGCAGAGTTGCAAGAGCTCCTCTTCTGATACATCTGGTTCAGAAGAGAATTCAGACAAAACAACAGATGTGTCTGATGGTTCTGGCTCAGCATTGTATCAGAACACTTCCATAGCGAATACTAGTAAAGGGCTGCACTGGCTCAAAGAGAACACAGAATCTGGTCTTAAGATGGAGGATTATGGTAATTGCAAGATTATGATGCAGAAAGAGGAAGTTGGGTTAACACCAAATCTGTCGTTTCATGGTTCATATGATTAG 1785 0.4398 MDSLKRNSGNSVDSQLWHACAGGLVQIPPTNSKVIYFPQGHAEHALEKIDCGNSRIPSLIPCKLSAITYMADPQTDEVYVKMRLTPLRDSEVTHEDDFLVGNFEFECQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTIIAKDMHGQNWKFRHIYRGTPRRHLLTTGWSNFVIHKKLVAGDSIVFLRAENGDLCIGIRRARKGIGGGTEYSYGWKQGAENGKNALTRNCNVDIRGRVTAESVIQAVTLAVNGKPFEVVYYPSASSPEFCVRGSAVRAAMQFKWSPGMRFKMPFETEDSSRISWFMGTISSVKEADPSRWPGSPWRLLEVEWDEPDLLQNVKRVNPWLVELVSTIPTHHHPSSFSPPAKKFRLPPQQDVPVMNQIPATSLASNVTNHSNPFCSVQDNTSTGIQGVRHAPDFSLTKLLTDDFSFGFSPLDRAVLPSTHLSRSILDKKNDNTFSFLTAKYPNECLKTPNETTTSHIFLFGQLIHTEQQSCKSSSSDTSGSEENSDKTTDVSDGSGSALYQNTSIANTSKGLHWLKENTESGLKMEDYGNCKIMMQKEEVGLTPNLSFHGSYD* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01551 594 Gene3D - 297 371 - -
Pte5g01551 594 CDD B3_DNA 113 214 IPR003340 GO:0003677
Pte5g01551 594 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Pte5g01551 594 SMART B3_2 114 216 IPR003340 GO:0003677
Pte5g01551 594 SUPERFAMILY DNA-binding pseudobarrel domain 107 216 IPR015300 -
Pte5g01551 594 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 549 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte5g01551 594 Gene3D - 112 215 IPR015300 -
Pte5g01551 594 MobiDBLite consensus disorder prediction 512 539 - -
Pte5g01551 594 Pfam Auxin response factor 260 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte5g01551 594 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Pte5g01551 594 FunFam Auxin response factor 112 216 - -
Pte5g01551 594 FunFam Auxin response factor 298 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01551 Pte-Chr5 37873779 37875894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01551 1 594 B3 DNA Binding Superfamily AT4G30080 54.093 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte5g01551 B3 3.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01551 - - qsa:O6P43_005033 735.332