LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g01549	ATGCCGCCAAAGTTCGATCCAAGCCAAGTAGTCGACGTTTATGTCCGCGTTACCGGCGGAGAGGTCGGAGCTGCGAGTTCACTCGCTCCCAAGATCGGTCCTTTGGGTTTGTCTCCAAAGAAGATCGGAGAAGACATTGCCAAAGAGACTGCTAAGGACTGGAAGGGTCTTCGTGTGACTGTGAAACTTACTGTACAGAACCGTCAAGCAAAAGTCGCTGTTGTGCCTTCTGCTGCTGCTCTGGTCATCAAGGCCTTGAAGGAACCTGAACGCGACAGGAAAAAGACGAAGAACATCAAGCACAATGGCAACATCTCATTGGACGATGTCATTGAGATTGCTAAGATCATGAAACCTAGGTCTATGGCTAAGGATTTGACTGGCACGGTGAAGGAAATTCTGGGTACTTGTGTTTCAGTTGGTTGCACTGTCGATCATAAGGACCCAAAGGATTTGCAGCAAGAGATTGCTGATGGAGACGTTGAGATTCCGCAAGATTAA	501	0.483	MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMAKDLTGTVKEILGTCVSVGCTVDHKDPKDLQQEIADGDVEIPQD*	167

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g01549	166	Pfam	Ribosomal protein L11, RNA binding domain	75	144	IPR020783	GO:0003735\|GO:0005840\|GO:0006412
	Pte5g01549	166	Hamap	50S ribosomal protein L11 [rplK].	9	146	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Pte5g01549	166	Gene3D	-	82	164	IPR036769	-
	Pte5g01549	166	SMART	rl11c	13	145	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Pte5g01549	166	Pfam	Ribosomal protein L11, N-terminal domain	13	69	IPR020784	-
	Pte5g01549	166	FunFam	60S ribosomal protein L12	1	81	-	-
	Pte5g01549	166	PANTHER	60S RIBOSOMAL PROTEIN L12	1	149	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Pte5g01549	166	FunFam	60S ribosomal protein L12	82	164	-	-
	Pte5g01549	166	ProSitePatterns	Ribosomal protein L11 signature.	131	145	IPR020785	GO:0003735\|GO:0005840\|GO:0006412
	Pte5g01549	166	Gene3D	-	1	81	IPR036796	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g01549	Pte-Chr5	37855507	37857106	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g01549	1	167	Cytoplasmic Ribosomal Protein Gene Family	AT2G37190	88.024	6.17e-107	301

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g01549	K02870		-	zju:107433067	320.857

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