Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01548 ATGACGAAGAACGGTGAAATTGCTGAGCGTGGGTCGTTCTCTGTCAAGGATTATCATGACCCACCGCCAGCTCCTCTTCTCGACATGGTGGAGCTAAGCAAATGGGTCTTTTACAGAGCCCTAATAGCCGAGTTTGTCGCCACTCTGCTTTTCCTCTATATCACAGTCCTTACTGTCATTGGGTACAAAAGTCAGACTGATCCTAACGCTCATGGGAACGCTTGTGCTGGAGTTGGTGTTCTTGGCATTGCATGGGCTTTTGGTGGCATGATCTTCATTTTGGTTTACTGCACTGCAGGGATTTCAGGGGGTCATATTAACCCAGCAGTGACATTCGGCCTATTCTTGGCTCGCAAGGTATCACTGAACCGAGCAGTGATGTACATGGTAGCTCAGTGCTTGGGAGCTATATGTGGTTCTGGGCTTGTAAAAGCACTCCAAAGTGCTCATTACACTAGGTATGGTGGTGGTGCCAATGTGCTTTCAACTGGGTACAGTAAAGGAGCTGGTTTAGGTGCTGAGATCATTGGAACCTTTGTGTTGGTTTACACAGTGTTCTCTGCCACTGATCCCAAGAGAAAAGCAAGAGACCCTCATGTCCCTGTTTTGGCCCCACTTCCAATTGGATTTGCTGTTTTCATTGTTCACATAGCTACCATCCCCATCACCGGCACTGGAATCAACCCAGCTAGGAGTCTTGGTCCTGCTGTTATGTTCAACCAAGACAAAGCCTGGCATAACCATTGGATCTTCTGGTTTGGACCATTCATTGGTGCAGCCATTGCAGCATTCTACCACCAATTCATATTGAGGGAAGGAGCAGTGAAAGCTTTAGGATCCTTTAGGAACAACCCCACTGTTTAA 864 0.4745 MTKNGEIAERGSFSVKDYHDPPPAPLLDMVELSKWVFYRALIAEFVATLLFLYITVLTVIGYKSQTDPNAHGNACAGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLNRAVMYMVAQCLGAICGSGLVKALQSAHYTRYGGGANVLSTGYSKGAGLGAEIIGTFVLVYTVFSATDPKRKARDPHVPVLAPLPIGFAVFIVHIATIPITGTGINPARSLGPAVMFNQDKAWHNHWIFWFGPFIGAAIAAFYHQFILREGAVKALGSFRNNPTV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01548 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Pte5g01548 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Pte5g01548 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Pte5g01548 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte5g01548 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 274 IPR034294 -
Pte5g01548 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01548 Pte-Chr5 37843919 37848660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01548 1 288 Major Intrinsic Protein MIP AT3G54820 79.514 2.89e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01548 K09872 - qsa:O6P43_005041 483.796