Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01513 ATGAATCCGGGTGTGTTCTTGTTAGTTCTGGTGGCTGCTTTCCATGTGACGGCGGCCAGGGTTGTTCTGATGGGAAGCAATGTCACTCTTTCATTCGATGATATTGAAGCTAATTTTGCTCCTTCTGTTAAAGGATCGGGAGAATGTGGGGTGTTGTATTTGGCAGAGCCTCTTGATGCCTGTACAAGCCTGAAGAATAATGCCAAACAGTATCCAAATGTGAGTTCCCCTTTTGTTCTAATTATCAGAGGAGGATGCAGCTTTGAGGAGAAAGTTAGAAGAGCTCAAAAGGCTGGCTTTGAAGCTGCAATTGTCTATGATAGTGAAGATGATGGCGTCTTGGTAGCGATGGCTGGTGACTCAAATGGCATTAAAATACATGCTCTGTTTATTTCAAAGGTTTCAGGTGAAATGCTAAAGAAATACGTGGGATTAACTGATGTGGAGCTTTTGTTAATTCCAAGTTTTGAGAACACTGCATGGTCAATAATGGCAATTTCATTCATTTCCCTACTTGCCATGTCTGCTGTGCTGGCCACTTGTTTCTTTGTTCATAGGCATCGTATAAGAAGAGAAAGGCCTCACGCTTCTTGCATTCGAGAATTTCATGGCATGAGCAAACGTCTAGTGAAAGCGATGCCAAGTTTGATATTCACTGCTGTTTCTGAGGATAACTGCACATCATCCACATGTGCCATTTGTCTTGAAGACTATAATGTAGGAGAAAAAATCAGAATTCTTCCATGCAGTCACAAATTTCATGCTTTCTGTGTGGACTCGTGGCTTACTTCATGGAGAACCTTTTGCCCGGTTTGCAAGCGGGATGCAAAAACTGGTACAGCTGATCCTCCAGCTTCAGAATCTACACCTTTGCTCTCATCCAGCCATGGATCTTTTGCTTCTTCTATTTTGTCATCAAGATCATCTTTACTGCCATCTCCATCAATACAAATTCTTCCACCATCATCACGTCCTGTTTCCCATCCTCATTCTTTTGCTAGCACGCCTCCAGTTCAGCGGTCTCTGAGGTCTTACCAGCAATCTCCTTTTCTTAGTATCAGCCGCAGCTCTGTTGATCTTAGAAATGCATCGCAAAGATCTCTAGCTTCTAATTTGGCTTCTCCACCTTCATTTGGTTATCCATCTGTATCACCTTTGAACTCAAGGTACATAACTCCGTATGTCATCAGTCCAAGCAATGCATCACTTAGCATTCATGGTTCTTCAAGTCATCATCAGCACCCTCTACGTTGTAGTGAGTCAGCAACAAGTTTTTCTCCTTTTGCTTCAGCCCATTCTCTACCAGAATGTTAA 1314 0.4269 MNPGVFLLVLVAAFHVTAARVVLMGSNVTLSFDDIEANFAPSVKGSGECGVLYLAEPLDACTSLKNNAKQYPNVSSPFVLIIRGGCSFEEKVRRAQKAGFEAAIVYDSEDDGVLVAMAGDSNGIKIHALFISKVSGEMLKKYVGLTDVELLLIPSFENTAWSIMAISFISLLAMSAVLATCFFVHRHRIRRERPHASCIREFHGMSKRLVKAMPSLIFTAVSEDNCTSSTCAICLEDYNVGEKIRILPCSHKFHAFCVDSWLTSWRTFCPVCKRDAKTGTADPPASESTPLLSSSHGSFASSILSSRSSLLPSPSIQILPPSSRPVSHPHSFASTPPVQRSLRSYQQSPFLSISRSSVDLRNASQRSLASNLASPPSFGYPSVSPLNSRYITPYVISPSNASLSIHGSSSHHQHPLRCSESATSFSPFASAHSLPEC* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01513 437 Pfam Ring finger domain 230 273 IPR001841 -
Pte5g01513 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 278 IPR013083 -
Pte5g01513 437 ProSiteProfiles Zinc finger RING-type profile. 231 273 IPR001841 -
Pte5g01513 437 SUPERFAMILY RING/U-box 222 283 - -
Pte5g01513 437 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 155 288 - -
Pte5g01513 437 CDD RING-H2_RNF103 228 279 - -
Pte5g01513 437 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 19 153 - -
Pte5g01513 437 Gene3D - 11 149 - -
Pte5g01513 437 SUPERFAMILY PA domain 73 140 IPR046450 -
Pte5g01513 437 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 191 278 - -
Pte5g01513 437 CDD PA_C_RZF_like 9 160 IPR044744 -
Pte5g01513 437 SMART ring_2 231 272 IPR001841 -
Pte5g01513 437 Pfam PA domain 59 139 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01513 Pte-Chr5 37550584 37553614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01513 13 436 C3H Transcription Factor Family AT1G22670 48.837 1.75e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01513 K15692 - qsa:O6P43_007998 632.484