Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01507 ATGAGTGTAAACGAAGCCAAAGCCTGTGAAAACGATAGGTCGATCGCCAGTTCATCAGATGCAATGCATTATAGTAACATGAAAGGGGTTGATCACAGAATGGAACAGCTGGAATCACGTGTACCGCCAGGATTTAGATTTCATCCAACAGAGGAAGAACTTGTTGGGTACTATCTCAAGAGGAAGATCGATTCTCTTAAAACTGATTTGGAAGTTATTATGGAGATTGATCTCTACAAAATTGAACCATGGGACATACAAGGTACTACATACCTACATAAGTAA 285 0.3965 MSVNEAKACENDRSIASSSDAMHYSNMKGVDHRMEQLESRVPPGFRFHPTEEELVGYYLKRKIDSLKTDLEVIMEIDLYKIEPWDIQGTTYLHK* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01507 94 Pfam No apical meristem (NAM) protein 42 89 IPR003441 GO:0003677|GO:0006355
Pte5g01507 94 SUPERFAMILY NAC domain 37 90 IPR036093 GO:0003677|GO:0006355
Pte5g01507 94 MobiDBLite consensus disorder prediction 1 23 - -
Pte5g01507 94 ProSiteProfiles NAC domain profile. 41 94 IPR003441 GO:0003677|GO:0006355
Pte5g01507 94 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 87 - -
Pte5g01507 94 Gene3D NAC domain 50 94 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01507 Pte-Chr5 37497142 37499075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01507 37 92 NAC Transcription Factor Family AT1G71930 71.429 7.09e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte5g01507 NAM 9.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01507 - - cic:CICLE_v10003255mg 102.834