Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01473 ATGACGGTGGCATCTGATTCTTCTCCTGCGGCTCTGAGTACGGGGAAGAGTAAGGCTTGGCCTCCTGGATTTCGTTTCCATCCAACTGATGAGGAATTGGTTCTGTTTTATCTGAAGAGAAGGATGTGCAAGAAGAAGTTTGTGCCTGATGTCATTGCTGAAACAGATGTATACAAATGGGATCCTGAGGAATTGCCTGGTCAATCTGCGCTCCAAAATGGAGATAGACAGTGGTTCTTTTTCAGTCCAAGGGATAGGAGATATCCCAATGGAGGCCGGTCCAACCGTGCTACAAGACACGGTTATTGGAAAGCGACTGGAAAAGATCGATGCATCTCATGCAATTCCAGAAACGTTGGGGTTAAGAAGACCCTAGTTTATTATAAAGGTCGAGCACCTACTGGGGAGCGTACTGATTGGGTTATGCACGAATATACATTGGATGAAGAGGAGCTTAAGAGATGCTTGAGCTTCAAGGAATATTATGCACTGTATAAGGTTTTCAAGAAAAGTGGACCTGGTCCCAAAAATGGTGAACAATATGGTGCCCCATTTAATGAGGAGGAGTGGGCTGATGACGATTATATCGATTTTAATTGCAGTCCTGCTTATATTGAGTTTTCAAGAAAGAAGGTTGGGGAGGTTACTTCTATTGACACAGCTGAAGTTAATTGCCAAGGTCAAGTGTCATTGAATGGTGATGATATTGATGATATCATAAAAAGTATTGCTAGTGATCCCGTCTTTGATGTTCCACGTAATGCTGAATACCCATATTCTTTGTCTCTGGCTGCAGAAGTAGAAATTCCTTGTTCTGACGTTGTAGCACCAGCGACATTCCAAGTTGATGACCCTGTCAGACAGCGAACACATGACTTCAATCTGTCAATGCCCGTGGAGTTACCTTTGCAAGAATCATCTGAGGTCACGTCAGCTCTAGCAACACACCAGGCTGATTACCCTGTGCCTCAGCAATATTTACAGCCTACATATGACTTTAGTCAATCAACTTCCCTTCAATTACCCATTCATGAATCATCTGAGGTCACTTCGGCCTTTTCCACCCAACAGCGTGATCCTCTTGTTCTTGGAGTGGGTGACTTCCTAGAGGTTGATGACCTCTTGAGTCCAGATATGATGTTGGCAAATGCAGATAAATCTGCAGAAAGTCTGCAATTTGATGATTTGGATGGATTGGGTGAATATGACCTCTATCATGATGCAGCTGCAATTTTTGGGGATATGGGGTCCATTGATCCAGAAACCAATTCACTGCCATATGTGAATACATTTGATAATAATGACAACAGTGTTTTGAATCATCATTTCCAGATGCATTCTAACCCAGAGGTTTCAAATCAAAATGGGCATGAACTATGGATGTGTGATCCTGGAAATACCTTTGCTTCTGCCAATTTAATGGACAAATCTTTCTCTCAACACCCGTCAGGTTTGTTGAATGAATCTGGAAACTTTTCAACTCAAGCCAATCATAGTATCAATGACACTGATCGTTCTTGGAACCGTTTCTCTTCTGCTCTTTGGTCTTTTGTGGAGTCTATTCCAACCAATCCTGCATCAGCCTCAGAAATCGTATTGGCGAGTCGGGCTTTTGAAAGGATGTCTAGCTTCAATAAGATAGTCAAGCAAACAAGTGCTGCTGCAGGTAATGATATTGCAAGTATCCGGCAATCTCAAAGAAAAAGATCATCTTTCATTTTCTTTCCCATCCTTGTTGCTGTTTGTGCCATCTATTGGGTTTCGATGGGAAACCTCATACTGCTGGGAAAATGGAACTGTTAA 1803 0.4243 MTVASDSSPAALSTGKSKAWPPGFRFHPTDEELVLFYLKRRMCKKKFVPDVIAETDVYKWDPEELPGQSALQNGDRQWFFFSPRDRRYPNGGRSNRATRHGYWKATGKDRCISCNSRNVGVKKTLVYYKGRAPTGERTDWVMHEYTLDEEELKRCLSFKEYYALYKVFKKSGPGPKNGEQYGAPFNEEEWADDDYIDFNCSPAYIEFSRKKVGEVTSIDTAEVNCQGQVSLNGDDIDDIIKSIASDPVFDVPRNAEYPYSLSLAAEVEIPCSDVVAPATFQVDDPVRQRTHDFNLSMPVELPLQESSEVTSALATHQADYPVPQQYLQPTYDFSQSTSLQLPIHESSEVTSAFSTQQRDPLVLGVGDFLEVDDLLSPDMMLANADKSAESLQFDDLDGLGEYDLYHDAAAIFGDMGSIDPETNSLPYVNTFDNNDNSVLNHHFQMHSNPEVSNQNGHELWMCDPGNTFASANLMDKSFSQHPSGLLNESGNFSTQANHSINDTDRSWNRFSSALWSFVESIPTNPASASEIVLASRAFERMSSFNKIVKQTSAAAGNDIASIRQSQRKRSSFIFFPILVAVCAIYWVSMGNLILLGKWNC* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01473 600 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 304 - -
Pte5g01473 600 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Pte5g01473 600 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Pte5g01473 600 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Pte5g01473 600 FunFam Nac domain-containing protein 86 29 173 - -
Pte5g01473 600 SUPERFAMILY NAC domain 19 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01473 Pte-Chr5 37088634 37092718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01473 5 597 NAC Transcription Factor Family AT1G34190 39.870 5.29e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte5g01473 NAM 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01473 - - qsa:O6P43_008042 581.252