Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte5g01472 | ATGACATCTTCACAGCACCGTCGCGTTTTTGTTGGGAACATACCGTATGATGCCACAGAGGAGCAGCTTATTGAAATTTGCCGGGAGGTTGGCCCCGTCGTATCATTCAGGTTAGTCATTGATAGAGAAACCGGGAAACCAAAAGGTTATGGATTCTGTGAGTACAAGGACGAAGAGACAGCTCTAAGTGCCTGCCGCAACCTCCAGGGTTATGAGATCAATGGCCGGCAACTTCGTGTTGATTTTGCTGAAAATGACAAAAACAATGACAAAAATCGAGAATGGGGTCGTGGTGGACCAGGTCTGGCTGCAAATGTTGAATCTCAAAGACAACTACGTGTACCTGTAAATCAACAAGACTTAATTCACAATCAGCCTACTGGAGTCCATCTTGCTGTAACAGCCTCCATGGTCATGGCTGGGGCTCTAGGTGGACCTCAGGCTGGAATACAGTCTAATCAAAGTGGTTTGCAGAGTCAAGCAGCATTGAGTTATGATCCTTTGACTGCTCATCTGGCCAAAATGTCTCTGAGTCAGTTGACTGAGATTATGTCAGAATTGAAGATGATGGCAACAAAAGATAAGGACCTAGCTCGGCAGCTATTGCTTTCTAGGCCCCAGTTATCAAAAGCTTTGTTTCAGGCGCAGATAATGCTGAACATGGTGACTCCGCAAGTGCTCCAAATGCCAAACCTGCAGCAGCCCCCAGGTCAGCTCTCCCCTGGCCAGTCTAGTCAGCAACCAGAAGTTCAAACTACAATGGGCCTCCCACCTTCCGCTCTGAACAAGTTGCCATCTGGGGTGGTATCTAAATGGCAAGTTGTAGACTCTAATTTGGATCACAATAAAGTATTGCCAAATCAATTTACTTCATCCATTCAGCACCGTGTTCAAATTACACAAAATCCATACGATCATGCTGTACCACAAAACACTGTTGTTGGGCAATCTAGTTCCATGCTTTCTACCGTAAACCTTCAATCACTAATCAGCATGCCAAGCGTGCTGCCGAACCAGCTAGGACAGGGTGGAGCGCCTAGTTTGCACTCAATTCGTGCGAACAATATCAAGCATTCTCCTCTTGTACCTCATCTGCCCTTGTCAGATGTAAGCCTTCAGACCCTGCTACCGCCTGAGGTCCAGGTTGCCTTATTGCAGCAAGTCTTGAGTTTAACACCGGAGCAGTTAACTTCTTTGCCAATTGAACAACAGCAACTAGTCATTCAGCTCCAAGAGGCAATTCGCCGAGATCAAATTTGGCCCTCACAGTCATATTAG | 1278 | 0.4648 | MTSSQHRRVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSACRNLQGYEINGRQLRVDFAENDKNNDKNREWGRGGPGLAANVESQRQLRVPVNQQDLIHNQPTGVHLAVTASMVMAGALGGPQAGIQSNQSGLQSQAALSYDPLTAHLAKMSLSQLTEIMSELKMMATKDKDLARQLLLSRPQLSKALFQAQIMLNMVTPQVLQMPNLQQPPGQLSPGQSSQQPEVQTTMGLPPSALNKLPSGVVSKWQVVDSNLDHNKVLPNQFTSSIQHRVQITQNPYDHAVPQNTVVGQSSSMLSTVNLQSLISMPSVLPNQLGQGGAPSLHSIRANNIKHSPLVPHLPLSDVSLQTLLPPEVQVALLQQVLSLTPEQLTSLPIEQQQLVIQLQEAIRRDQIWPSQSY* | 426 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte5g01472 | 425 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Pte5g01472 | 425 | Gene3D | - | 1 | 113 | IPR012677 | - | |
Pte5g01472 | 425 | MobiDBLite | consensus disorder prediction | 230 | 254 | - | - | |
Pte5g01472 | 425 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 3 | 417 | - | - | |
Pte5g01472 | 425 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Pte5g01472 | 425 | Gene3D | - | 154 | 230 | - | - | |
Pte5g01472 | 425 | Gene3D | - | 377 | 418 | IPR038192 | - | |
Pte5g01472 | 425 | Pfam | Transcription termination and cleavage factor C-terminal | 381 | 416 | IPR026896 | GO:0031124 | |
Pte5g01472 | 425 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 163 | 228 | IPR025742 | - | |
Pte5g01472 | 425 | FunFam | Cleavage stimulating factor 64 | 155 | 230 | - | - | |
Pte5g01472 | 425 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Pte5g01472 | 425 | FunFam | Cleavage stimulating factor 64 | 1 | 116 | - | - | |
Pte5g01472 | 425 | CDD | RRM_CSTF2_RNA15_like | 7 | 83 | - | - | |
Pte5g01472 | 425 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 101 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte5g01472 | Pte-Chr5 | 37080746 | 37087334 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte5g01472 | 9 | 86 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 33.333 | 3.74e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte5g01472 | K14407 | - | cave:132184118 | 420.624 |