Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01472 ATGACATCTTCACAGCACCGTCGCGTTTTTGTTGGGAACATACCGTATGATGCCACAGAGGAGCAGCTTATTGAAATTTGCCGGGAGGTTGGCCCCGTCGTATCATTCAGGTTAGTCATTGATAGAGAAACCGGGAAACCAAAAGGTTATGGATTCTGTGAGTACAAGGACGAAGAGACAGCTCTAAGTGCCTGCCGCAACCTCCAGGGTTATGAGATCAATGGCCGGCAACTTCGTGTTGATTTTGCTGAAAATGACAAAAACAATGACAAAAATCGAGAATGGGGTCGTGGTGGACCAGGTCTGGCTGCAAATGTTGAATCTCAAAGACAACTACGTGTACCTGTAAATCAACAAGACTTAATTCACAATCAGCCTACTGGAGTCCATCTTGCTGTAACAGCCTCCATGGTCATGGCTGGGGCTCTAGGTGGACCTCAGGCTGGAATACAGTCTAATCAAAGTGGTTTGCAGAGTCAAGCAGCATTGAGTTATGATCCTTTGACTGCTCATCTGGCCAAAATGTCTCTGAGTCAGTTGACTGAGATTATGTCAGAATTGAAGATGATGGCAACAAAAGATAAGGACCTAGCTCGGCAGCTATTGCTTTCTAGGCCCCAGTTATCAAAAGCTTTGTTTCAGGCGCAGATAATGCTGAACATGGTGACTCCGCAAGTGCTCCAAATGCCAAACCTGCAGCAGCCCCCAGGTCAGCTCTCCCCTGGCCAGTCTAGTCAGCAACCAGAAGTTCAAACTACAATGGGCCTCCCACCTTCCGCTCTGAACAAGTTGCCATCTGGGGTGGTATCTAAATGGCAAGTTGTAGACTCTAATTTGGATCACAATAAAGTATTGCCAAATCAATTTACTTCATCCATTCAGCACCGTGTTCAAATTACACAAAATCCATACGATCATGCTGTACCACAAAACACTGTTGTTGGGCAATCTAGTTCCATGCTTTCTACCGTAAACCTTCAATCACTAATCAGCATGCCAAGCGTGCTGCCGAACCAGCTAGGACAGGGTGGAGCGCCTAGTTTGCACTCAATTCGTGCGAACAATATCAAGCATTCTCCTCTTGTACCTCATCTGCCCTTGTCAGATGTAAGCCTTCAGACCCTGCTACCGCCTGAGGTCCAGGTTGCCTTATTGCAGCAAGTCTTGAGTTTAACACCGGAGCAGTTAACTTCTTTGCCAATTGAACAACAGCAACTAGTCATTCAGCTCCAAGAGGCAATTCGCCGAGATCAAATTTGGCCCTCACAGTCATATTAG 1278 0.4648 MTSSQHRRVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSACRNLQGYEINGRQLRVDFAENDKNNDKNREWGRGGPGLAANVESQRQLRVPVNQQDLIHNQPTGVHLAVTASMVMAGALGGPQAGIQSNQSGLQSQAALSYDPLTAHLAKMSLSQLTEIMSELKMMATKDKDLARQLLLSRPQLSKALFQAQIMLNMVTPQVLQMPNLQQPPGQLSPGQSSQQPEVQTTMGLPPSALNKLPSGVVSKWQVVDSNLDHNKVLPNQFTSSIQHRVQITQNPYDHAVPQNTVVGQSSSMLSTVNLQSLISMPSVLPNQLGQGGAPSLHSIRANNIKHSPLVPHLPLSDVSLQTLLPPEVQVALLQQVLSLTPEQLTSLPIEQQQLVIQLQEAIRRDQIWPSQSY* 426
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01472 425 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pte5g01472 425 Gene3D - 1 113 IPR012677 -
Pte5g01472 425 MobiDBLite consensus disorder prediction 230 254 - -
Pte5g01472 425 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 417 - -
Pte5g01472 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pte5g01472 425 Gene3D - 154 230 - -
Pte5g01472 425 Gene3D - 377 418 IPR038192 -
Pte5g01472 425 Pfam Transcription termination and cleavage factor C-terminal 381 416 IPR026896 GO:0031124
Pte5g01472 425 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 228 IPR025742 -
Pte5g01472 425 FunFam Cleavage stimulating factor 64 155 230 - -
Pte5g01472 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Pte5g01472 425 FunFam Cleavage stimulating factor 64 1 116 - -
Pte5g01472 425 CDD RRM_CSTF2_RNA15_like 7 83 - -
Pte5g01472 425 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte5g01472 Pte-Chr5 37080746 37087334 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01472 9 86 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 3.74e-07 50.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01472 K14407 - cave:132184118 420.624