Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01456 ATGTCATTCCGCAGTATAGTTCGTGATCTGAGGGATGGACTTGGAAGTTTATCCAGAAGGAGTTTTGAGGTCAGGCTCCCTGGACACCATAAGGGTAAATCAGTTGGCTCAACTCACGAGTTGGATGCTCAGCTTCCAGTAATCCAGAACAGTCGTTGGGCTAGCCTACCACCTGAGCTTCTACGTGATGTTATCAAACGATTGGAAGCAAGTGAGAGTACATGGCCTGCCCGCAAGCATGTTGTTGCATGTGCTGCTGTGTGTAAGTCATGGAGGGAAATGTGCAAAGATATCGTCACAAGCCCTGAATTCTCTGGGAAGATTACTTTCCCCATTTCTCTGAAGCAGCCAGGGTCTAGGGATGGAACCATCCAGTGCTTTATTAAGAGGGATAAATCCAAACTAACTTATCACCTTTTCCTTTGTCTTAGCCCTGCTCTACTGGTTGAAAACGGAAAGTATCTTCTTTCTGCAAAACGGACCAGAAGAACTACCAGCACAGAGTATATAATTTCCATGGATGCAGATAACATAACGAGATCTAGTAGCAGTTACATTGGAAAACTGAGGTCAAATTTTCTGGGTACCAAATTCATAATATACTACACACAACCTCCTTACAACCATTCACAGATGCCTCCTCCAGGCCGCAGCCGTAGATTTTACTCAAAAAAGGTTTCTCCTAAGGTCCCAACTGGCAGCTACAACATAGCTCAGATCAACTATGAGTTGAATGTACTAGGCACCAGAGGTCCACGAAGAATGCACTGCATGATGCACTCAATCCCTGCATCTGCCCTTGAGCCTGGAGGCAGTGTCCCTGGGCAGCCAGAACTCCTTTCCCGGTGTCTTGAAGACTCTTTCCGTAGCGCATCCTTCTCAAAGTCAATTGACAATTCAACCGAGTTCAGCAGCTCTAGATTTTCTGACATCATGGGGGTACAGAACGAGGAAGAGGAGGGAAAAGTCAGACCGCTAGTTTTGAAGAACAAGGCACCAAGGTGGCATGAACAATTGCAGTGTTGGTGCCTCAACTTCAGGGGCAGGGTAACAGTTGCCTCAGTCAAAAATTTTCAGCTGATTGCTGCCTCGCAACCTGCAGCTGGTGCACCCACCCCATCACAGCCGTCAACACAATCTGATCACGACAAGATTATTCTGCAGTTTGGCAAGGTTGGCAAAGATATGTTTACAATGGATTACAGATATCCTCTTTCAGCATTTCAGGCTTTTGCAATATGCTTGACAAGCTTTGATACCAAATTGGCATGTGAATAG 1278 0.4593 MSFRSIVRDLRDGLGSLSRRSFEVRLPGHHKGKSVGSTHELDAQLPVIQNSRWASLPPELLRDVIKRLEASESTWPARKHVVACAAVCKSWREMCKDIVTSPEFSGKITFPISLKQPGSRDGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKYLLSAKRTRRTTSTEYIISMDADNITRSSSSYIGKLRSNFLGTKFIIYYTQPPYNHSQMPPPGRSRRFYSKKVSPKVPTGSYNIAQINYELNVLGTRGPRRMHCMMHSIPASALEPGGSVPGQPELLSRCLEDSFRSASFSKSIDNSTEFSSSRFSDIMGVQNEEEEGKVRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPAAGAPTPSQPSTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01456 425 Pfam F-box domain 53 99 IPR001810 GO:0005515
Pte5g01456 425 FunFam Tubby-like F-box protein 48 101 - -
Pte5g01456 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Pte5g01456 425 FunFam Tubby-like F-box protein 110 425 - -
Pte5g01456 425 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Pte5g01456 425 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Pte5g01456 425 Gene3D - 48 100 - -
Pte5g01456 425 Pfam Tub family 114 420 IPR000007 -
Pte5g01456 425 Gene3D Tubby Protein; Chain A 113 419 IPR025659 -
Pte5g01456 425 CDD F-box_AtTLP-like 53 97 - -
Pte5g01456 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Pte5g01456 425 PANTHER TUBBY-RELATED 33 423 - -
Pte5g01456 425 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Pte5g01456 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pte5g01456 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Pte5g01456 425 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Pte5g01456 425 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Pte5g01456 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pte5g01456 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01456 Pte-Chr5 36920640 36926239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01456 1 426 TUB Transcription Factor Family AT1G76900 69.737 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte5g01456 Tub 2.7e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01456 K19600 - rcu:8283226 765.763