Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01436 ATGGCCGCTGCAGCAATTCCAACACCGGGAGTGGTTCAGCCTCTTGTTCAGGGGACGGTGACTTTGCCGGCCGGACCTTTTGTGAATGCCTCATTGTACGTTGGAGATCTTGATCAGGGTGTGAATGAAGCTCAGTTGTATGAGCTTTTTAGCAGCATTGGTCAAGTTCTCTCAGTCAGAGTTTGTAGGGATCAGACCAGGCGATCACTCGGTTATGGCTATGTCAATTACGGCAGTGCCCAGGATGCTGCTAATGCCATCGACATTCTCAACTTTACTCCAATTAATGGAAAACCTATTCGAATTATGCATTCTCATCGGGATCCTAGTATTCGGAAAAGTGGTATTGCCAATGTTTTTATCAAGAACCTAGACCCATCGCTGGATAACAAGTCCCTGCATGACATTTTTGCTGCTTTTGGATCTGTACTTTCTTGTAAGGTAGCACTTGACAGCAGTGGTCGATCAAAAGGTTATGGTTTTGTACAATTTGAAAAGGAAGAGTCTGCAAAAAATGCCATCAACAAGTTGAATGGAATGTTATTTAATGATAAGCAAGTATATGTTGGGTCTTTTGTTAGGCGCCAGGACCGAAACCAGACAAATGACTCACCTAAGTTCACTAATGTGTATGTGAAGAATTTCTCAGAAACAGTTACCGACGAGGACCTTAGGAAACTATTCAGTCCTTTTGGAACCATAACTAGTGCAGTTGTTATGAAGGACGCTAATGGGAAGTCTAGATGTTTTGGTTTTGTGAACTTTCAGAGTCCAGATTCTGCTGATGCTGCAGTTCGTGGCTTAAATGGAACCACTCCTAATGATGACAAGGTTCTGTATGTAGGCAGGGCTCAAAGAAAAACGGAAAGGGAGGTTGAGTTGAGGACAAAATTTGAGCAGGAAAGAATTAGCAGATATGAAAAACTACAGGGTGCGAATTTGTATCTGAAAAATCTGGATGATACTATTAATGATGAAAAGCTAAAGGAGATGTTTTCCGAGTTTGGCACAGTGACATCATGCAAGATCATGTGTGATCCAAGTGGGCGTAGCAAGGGCTCTGGGTTTGTAGCATTCTCTACACCTGAGGAGGCAAATAATGCTCTGGCTGAAATGAATGGGAAAATGTTCGACGGGAAGCCTTTGTATGTTGCTATTGCCCAGCGCAAAGAAGAGAGGAAGGCCCACCTTCAGGAACATTTTGCTCAACTCCATGCACATGGGATTGCACCCATTCCTGGGATTCATGGACCAAGGCTTGCCCCTCAGCAGTTGTATTTCGGTCAAGGTACCGGTATCCTACCTCCTCAGCCTGCTGGATTCGGTTTCCACCAGCAAGTCATGCCACGCCCAGGCGTCGCTCCGAATTTTGTGATGCCTTACCAACTACAAAGGCAACAAGGACAACAACCTGGGCAAAGGATGGGAGGTTACCGAAGAAATAGCAACCTTTCTCATGCACCGCACCAGCAACAGATGCTCCATCGAAGCTCCAATCATCAAGGCCACAGATATATGGGCAACCACTACCGAAATAACATGGAACCACCCGTTATTCCTCAAGGCTTTGTAGCCCCTGTGATGCCATTGCCTTTTGATCGTGCTTCTGGGGTTGCTGCTGCTCCTCCTAATGATATCATGCAGCGACGAGGACCGATGTCAGCTCCTCTTGATAACCAAAGTCTTGCTTCAGCTTTATCTTCTGCAAGCCCACAAGAACAACAAAGGATCCTTGGTGAATATCTCTATCCTCTAGTGAACCGTCTCGAACCAAACCATGCCGGAAAGGTTACAGGAATGTTGCTGGAGATGGATCAATCAGAGGTAATCCATCTGATTGAGTCTCCCGAGGATTTGAAGGCAAAAGTGTCAGAAGCAATGCAGGCACTTCTTAGAGCTTCAGAAGGTTCTGAAGTTACGGAGCAGCTTAGCTCATTAGGACTGAGTGAAGAATGA 1956 0.4545 MAAAAIPTPGVVQPLVQGTVTLPAGPFVNASLYVGDLDQGVNEAQLYELFSSIGQVLSVRVCRDQTRRSLGYGYVNYGSAQDAANAIDILNFTPINGKPIRIMHSHRDPSIRKSGIANVFIKNLDPSLDNKSLHDIFAAFGSVLSCKVALDSSGRSKGYGFVQFEKEESAKNAINKLNGMLFNDKQVYVGSFVRRQDRNQTNDSPKFTNVYVKNFSETVTDEDLRKLFSPFGTITSAVVMKDANGKSRCFGFVNFQSPDSADAAVRGLNGTTPNDDKVLYVGRAQRKTEREVELRTKFEQERISRYEKLQGANLYLKNLDDTINDEKLKEMFSEFGTVTSCKIMCDPSGRSKGSGFVAFSTPEEANNALAEMNGKMFDGKPLYVAIAQRKEERKAHLQEHFAQLHAHGIAPIPGIHGPRLAPQQLYFGQGTGILPPQPAGFGFHQQVMPRPGVAPNFVMPYQLQRQQGQQPGQRMGGYRRNSNLSHAPHQQQMLHRSSNHQGHRYMGNHYRNNMEPPVIPQGFVAPVMPLPFDRASGVAAAPPNDIMQRRGPMSAPLDNQSLASALSSASPQEQQRILGEYLYPLVNRLEPNHAGKVTGMLLEMDQSEVIHLIESPEDLKAKVSEAMQALLRASEGSEVTEQLSSLGLSEE* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01436 651 CDD RRM2_I_PABPs 115 190 IPR045305 -
Pte5g01436 651 SUPERFAMILY RNA-binding domain, RBD 197 297 IPR035979 GO:0003676
Pte5g01436 651 Gene3D - 117 190 IPR012677 -
Pte5g01436 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 107 IPR000504 GO:0003723
Pte5g01436 651 MobiDBLite consensus disorder prediction 468 506 - -
Pte5g01436 651 CDD RRM4_I_PABPs 311 389 - -
Pte5g01436 651 SUPERFAMILY RNA-binding domain, RBD 30 197 IPR035979 GO:0003676
Pte5g01436 651 Gene3D - 555 635 - -
Pte5g01436 651 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Pte5g01436 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 630 IPR006515 GO:0003723
Pte5g01436 651 Gene3D - 191 294 IPR012677 -
Pte5g01436 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Pte5g01436 651 FunFam Polyadenylate-binding protein 16 111 - -
Pte5g01436 651 FunFam Polyadenylate-binding protein 112 198 - -
Pte5g01436 651 SMART rrm1_1 313 385 IPR000504 GO:0003723
Pte5g01436 651 SMART rrm1_1 209 282 IPR000504 GO:0003723
Pte5g01436 651 SMART rrm1_1 118 190 IPR000504 GO:0003723
Pte5g01436 651 SMART rrm1_1 31 103 IPR000504 GO:0003723
Pte5g01436 651 SMART poly_2 570 633 IPR002004 GO:0003723
Pte5g01436 651 MobiDBLite consensus disorder prediction 468 508 - -
Pte5g01436 651 Gene3D - 23 115 IPR012677 -
Pte5g01436 651 SMART rrm2_1 118 190 IPR003954 GO:0003676
Pte5g01436 651 SMART rrm2_1 313 385 IPR003954 GO:0003676
Pte5g01436 651 SMART rrm2_1 209 281 IPR003954 GO:0003676
Pte5g01436 651 SMART rrm2_1 31 103 IPR003954 GO:0003676
Pte5g01436 651 FunFam Polyadenylate-binding protein 199 294 - -
Pte5g01436 651 Gene3D - 295 401 IPR012677 -
Pte5g01436 651 FunFam Polyadenylate-binding protein 295 400 - -
Pte5g01436 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Pte5g01436 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Pte5g01436 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Pte5g01436 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Pte5g01436 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Pte5g01436 651 PANTHER RNA BINDING PROTEIN 25 91 - -
Pte5g01436 651 SUPERFAMILY RNA-binding domain, RBD 308 396 IPR035979 GO:0003676
Pte5g01436 651 CDD RRM3_I_PABPs 207 287 - -
Pte5g01436 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Pte5g01436 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Pte5g01436 651 SUPERFAMILY PABC (PABP) domain 562 634 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01436 Pte-Chr5 36741618 36746132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01436 6 630 Eukaryotic Initiation Factors Gene Family AT1G22760 55.573 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01436 K13126 - gmx:100783163 836.254