Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01360 ATGGCTCTGCCGGCGGTAGAAAATAACCACAACCGCGAGTCCACCATGGGTGGGGGTCTTGAGTCTCAGAGGTCTATCCCTACACCTTTCCTCACAAAGACTTATCAGTTAGTCGAAGATCCCGCCATCGATGATGTTATTTCATGGAACGAAGATGGATCCACCTTCGTTGTTTGGAACCCTACTGTTTTCGCAAGAGATTTGCTTCCCAAGTATTTCAAGCACAATAATTTCTCTAGCTTTGTTCGTCAGCTCAATACCTATGGATTCAGAAAGGTCGTGCCTGATCGCTGGGAATTTTCAAACGAGTGCTTCCGTCGAGGTGACAAGAAACTTTTGTGTGAAATTCAGAGGCGGAAGATTTCATATCCTGCAGCTCCTTCTCCTACTGCTGCTGCTACTACCACAGCCACGACGGTGATGGCGACAACCACGATTTTATCTCAGCCAGCTCCTCCTCCTCTTGGGACCGCAAAACCGATGACATCACCGACGAATTCAGGAGAGGAGCAGGTCCTCTCGTCTAACTCTTCGCCAAGAAGACCTCCGGTGGAGCTTTTAGACGAGAACGAGAGACTAAGAAAAGAGAACGTACAGCTAACAAAAGAGTTAGCCGGAATGAGATCTCTGTGTAACAATATCTTCAGTCTGATGTCAAACTACGCTACCGGCCAACCAGGATCAGGTGTTTGTAACGGTGTACCGTTGACGAAACCACTCGATCTCATGCCGGGGAAACAATTTTCCGGTGAAGGAATGGAAATGATGATGGAGGTGGATGTCGATGGTATCCATCCCAAGATATTTGGGGTGGCGATTGGCGCTAAACGGGCGAGAGAGTGTGGCGGAGGTAGCTTTTGCGATAGAACAGCGGTGGCAATGGAGGAGAGTGACACGCTGTTAAGGTTGCATCAGCCTGTTCATGCGGACGTGAAATCAGAGCCGTACGATTGTGAGAACATAGATGGTAATAGTAGTCAAGGAATGCGGTGGCTAAATCGGTGTCATCAAGCAAATCAGAGAGTATGTAACTAA 1035 0.4821 MALPAVENNHNRESTMGGGLESQRSIPTPFLTKTYQLVEDPAIDDVISWNEDGSTFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGDKKLLCEIQRRKISYPAAPSPTAAATTTATTVMATTTILSQPAPPPLGTAKPMTSPTNSGEEQVLSSNSSPRRPPVELLDENERLRKENVQLTKELAGMRSLCNNIFSLMSNYATGQPGSGVCNGVPLTKPLDLMPGKQFSGEGMEMMMEVDVDGIHPKIFGVAIGAKRARECGGGSFCDRTAVAMEESDTLLRLHQPVHADVKSEPYDCENIDGNSSQGMRWLNRCHQANQRVCN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01360 344 Gene3D - 22 120 IPR036388 -
Pte5g01360 344 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g01360 344 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g01360 344 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g01360 344 Coils Coil 190 210 - -
Pte5g01360 344 FunFam Heat stress transcription factor B-4 22 120 - -
Pte5g01360 344 MobiDBLite consensus disorder prediction 8 25 - -
Pte5g01360 344 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g01360 344 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g01360 344 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g01360 344 MobiDBLite consensus disorder prediction 160 181 - -
Pte5g01360 344 SUPERFAMILY "Winged helix" DNA-binding domain 27 119 IPR036390 -
Pte5g01360 344 MobiDBLite consensus disorder prediction 147 192 - -
Pte5g01360 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 221 IPR027725 -
Pte5g01360 344 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01360 Pte-Chr5 35779705 35781399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01360 13 345 HSF AT5G62020 46.418 5.85e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte5g01360 HSF_DNA-bind 1.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01360 K09419 - gmx:100812267 384.415