Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01344 ATGCCTACTAATTGCATTGCCGAGCTTGCTCCTCCGCCACCACCTATTAACCGTTCAATGAGAAATCCCGCTTCGTTTTATCTCTCCACCTTAAGAAAGATGGAGGGACATGGAGAGATGGGTCTTATTGCGGAAAGCTTTAATCCTAACATGTTGGTTAGGATGAGAAGTGACGAGTATGAGAGCCGATCGGGGAGTGACAACTTTGAAGTTGCCTCAGGTGATGATCAGGAAGGTGGGGATGGTGAGCCACCAAGGAAGAAGAAATATCACAGACACACTCCTCACCAAATTCAAGAGCTTGAGAATTTCTTCAAGGAGTGCCCTCATCCTGATGAAAAGCAAAGGTTGGATCTTAGCAGGAGGCTTGGCTTGGAAACGAAGCAAGTCAAGTTCTGGTTTCAGAACCGGCGAACCCAGATGAAGACCCAAATTGAACGGCACGAGAATGTAATTCTCAGACAAGAAAATGAGAAGCTGCGAGCTGAAAACAGCATTATGAAGGATGCTTTGGGTAACCCCATCTGTAACAACTGTGGGGGCCCTGCGATTCCTGTTCAAATTTCAATGGAGGAGCACCATCTTAGAGTTGAGAATGCTCGATTGAAGGAAGAATTAAGTCGTCTATGTACTTTGTCAAACAAGTTTCTGGTCAAGCAGAATCCATTTTTGGATGATCCTCTTCGAATTACGAATGCATCTATTGGCTTGGAGCTTGGTGTAGGCAGAAATAGTACGAGTGCAGGTGTAAACAGCAGTTCTAGCTTGCCAATGCGCCTTAACTTAGGCGATGGACTTATGGACACTTCACTTGGATTGCTGGCTATGAAGTCATCTACATTTGGATTGATGGGGAATGAAGTTCCAGTTGACAGATCTATGTTAGTAGAGCTTGCCTTGAATTCTATGGATGAGCTAGTTAAGATGGCTCAGGCTGAAGGACCTCTTTGGATCAAAGCTCTAGATGGAATGGAGGTGCTGAACCGTGAGGAGTACTTGAGAAATTTTGCTCCTTGTCTAGCCCCAAAACCCACTGGTTACGTCACTGAGGCTACTAGACAGAGCGGTTTAGTTATAATCAACAGTGTGGCTCTGGTAGAGACTTTGATGGATGCGGGCCGATGGCAAGCAATGTTTCCTGGATTGATTGCAAGTGCTGCTACACTTGATTTAGTGTCAAATGGCATGAATGGTTCTCCGAATGGTACTCTACAAGTGATGAATGCTGAGATTCAATTGCTTTCACCATTGATTCCGATTCGTCAATTGAGGTTTATTCGCTTCTGCAAGCAGCATGCAGAGGGGTTATGGGCTGTAGTTGATGTTTCCGTCGACATTGGCCCGGAAAATACCGGCAAAAACCCATACTTAAACTGTAGAAAGCTTCCTTCCGGCTGCATTGTGCAGGATATGCCCAATGGTTACTCAAAAGTCATTTGGATTGAGCATTCAGAGTATGATGACAGTCTCATCCCTCAGCTCTACCGGCCATTGCTTAGTTCTGGCATTGGGTTTGGTGCTAACAGGTGGACTGCCACTCTTCAAAGACAATGTGAATGCTTGGCAATTCTCATGCACCCTTCCATGCCTAATAATGACCATTCAGCCATAAGCCATGCTGGTAAGAGAAGCATGTTGAAGCTTGCCCAGCGTATGACTGATAGCTTCTGTTATGGGATTTGTCCATCGAGTGTGCGCAAGTGGGAGAAGCTCTCACTTGGAAATTTGGATAATGACATGAGAGTGATGGCTCGTAAGAACGTCGATGACCCCGGTGAGCCTCCTGGTTTTCTTCTCAGTGCTGCAACTTCTGTCTGGATGCCAGTTTCACGGCAGAAGCTGTTCAACTTTCTGAGAAACGAACAGCTCAGGAGCGAGTGGGACATTTTGTCAAATGGTGGTCCGATGCATGAGATGGTCCATATTGCCAAAGGCCAAGGGCAAGGCAATTGTGTCTCCCTTCTTCGTTCTAATACTGTGCATGCCAATGAGAGCTCCGTGCTGATATTGCAAGAGACATGGACAGACGCCTCATGCTCAGCAATAGTATATGCTCCCGTTGATGTAGATTCTCTAAACATCGTAATGAGTGGCGGGGATTCCGCATATGTGCCGCTTCTGCCTTCGGGATTTGCAATTCTTCCAGATGCCCGATCAGGATACAGCAATGGTGGTGTAGGTGATAATGAACATGATAGTGGCGGAAGCCTGCTTACAGTTGGGTTCCAGATATTGGTGAGTAGCGTGCCGTCATCAAATCTCACTTCTGAGTCAGTTGACACTCTGAACAATGTCATTGCCAACACCATTCAGAGGATCAAAACTGTTCTCCATGTAGAATGA 2343 0.4609 MPTNCIAELAPPPPPINRSMRNPASFYLSTLRKMEGHGEMGLIAESFNPNMLVRMRSDEYESRSGSDNFEVASGDDQEGGDGEPPRKKKYHRHTPHQIQELENFFKECPHPDEKQRLDLSRRLGLETKQVKFWFQNRRTQMKTQIERHENVILRQENEKLRAENSIMKDALGNPICNNCGGPAIPVQISMEEHHLRVENARLKEELSRLCTLSNKFLVKQNPFLDDPLRITNASIGLELGVGRNSTSAGVNSSSSLPMRLNLGDGLMDTSLGLLAMKSSTFGLMGNEVPVDRSMLVELALNSMDELVKMAQAEGPLWIKALDGMEVLNREEYLRNFAPCLAPKPTGYVTEATRQSGLVIINSVALVETLMDAGRWQAMFPGLIASAATLDLVSNGMNGSPNGTLQVMNAEIQLLSPLIPIRQLRFIRFCKQHAEGLWAVVDVSVDIGPENTGKNPYLNCRKLPSGCIVQDMPNGYSKVIWIEHSEYDDSLIPQLYRPLLSSGIGFGANRWTATLQRQCECLAILMHPSMPNNDHSAISHAGKRSMLKLAQRMTDSFCYGICPSSVRKWEKLSLGNLDNDMRVMARKNVDDPGEPPGFLLSAATSVWMPVSRQKLFNFLRNEQLRSEWDILSNGGPMHEMVHIAKGQGQGNCVSLLRSNTVHANESSVLILQETWTDASCSAIVYAPVDVDSLNIVMSGGDSAYVPLLPSGFAILPDARSGYSNGGVGDNEHDSGGSLLTVGFQILVSSVPSSNLTSESVDTLNNVIANTIQRIKTVLHVE* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01344 780 ProSiteProfiles START domain profile. 288 523 IPR002913 GO:0008289
Pte5g01344 780 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Pte5g01344 780 Pfam START domain 298 520 IPR002913 GO:0008289
Pte5g01344 780 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Pte5g01344 780 SUPERFAMILY Bet v1-like 289 520 - -
Pte5g01344 780 CDD START_ArGLABRA2_like 292 519 - -
Pte5g01344 780 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Pte5g01344 780 MobiDBLite consensus disorder prediction 58 94 - -
Pte5g01344 780 SUPERFAMILY Homeodomain-like 74 144 IPR009057 -
Pte5g01344 780 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 778 IPR042160 -
Pte5g01344 780 SMART START_1 297 520 IPR002913 GO:0008289
Pte5g01344 780 SMART HOX_1 86 148 IPR001356 GO:0003677
Pte5g01344 780 Coils Coil 138 170 - -
Pte5g01344 780 Gene3D - 75 160 - -
Pte5g01344 780 CDD homeodomain 87 144 IPR001356 GO:0003677
Pte5g01344 780 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Pte5g01344 780 SUPERFAMILY Bet v1-like 548 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01344 Pte-Chr5 35566244 35571808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01344 34 780 Homeobox Transcription Factor Family AT3G61150 54.981 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte5g01344 START 2.4e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01344 K09338 - gmx:100785102 1081.63