Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01334 ATGGACAACAATGCTTCTCATGCAAACGTGCCTTCAAGTCATGACCCAATCACTATACAAGTCCCTAATGACCCTTTCCTCCTCTCTTCAGTCACAGCCACAGCCGCTACCGGTGCTGCAACCGGCCCATCGTTGGTGTCCCCACGAAGATTTACTGAAACTGCAACATCAATACAACCGCGATCACATGGATCTTCATCTTTGTCATCCTCAAGGGGGATAGGGTTTCCGACTGGGTTGTCGTCAAGTCACCGTCGACATGGCTCTAGGAGGAATTGGAGATACAGAGGTATCAGATGCAGAAGTGGGAAGTGGGTGTCAGAGATACGGGAGCCACGGAAGACAACACGCATTTGGCTTGGTACGTATCCAGCTCCTGAAATGGCAGGAGCTGCGTATGACGTAGCAGCTTTAGCATTGAAAGGGCCTGATGCCTCTATTAATTTTCCTGATTCAATACACTCCTATCCGATACCGACTTCAACCTCTGCAAGTGATATTAGAGCAGCAGCATCCATGGCTGCTGAGGCAAGGCAGCTTCATAAACTAGGATCAGTTAACAATCCAGAAGCACATCAAATGACTGATAATGTGGAAACGTCATGGATTAGCAGTGCTCAACCATTACAGAACAGAGGGGAGTTCATTGACGAGGATGAATTGCTGAACATGCCAAGTTTGCTCGTTGATATGGCTGGTGGAATGCTTGTAAGCCCTCCTAGGATAACGTCGCAATCATCTGACGACTCGCAGGCAAGCTCAGAGGGAGACAACCTTTGGACCTACACATGA 792 0.4848 MDNNASHANVPSSHDPITIQVPNDPFLLSSVTATAATGAATGPSLVSPRRFTETATSIQPRSHGSSSLSSSRGIGFPTGLSSSHRRHGSRRNWRYRGIRCRSGKWVSEIREPRKTTRIWLGTYPAPEMAGAAYDVAALALKGPDASINFPDSIHSYPIPTSTSASDIRAAASMAAEARQLHKLGSVNNPEAHQMTDNVETSWISSAQPLQNRGEFIDEDELLNMPSLLVDMAGGMLVSPPRITSQSSDDSQASSEGDNLWTYT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01334 263 MobiDBLite consensus disorder prediction 40 90 - -
Pte5g01334 263 ProSiteProfiles AP2/ERF domain profile. 70 150 IPR001471 GO:0003700|GO:0006355
Pte5g01334 263 MobiDBLite consensus disorder prediction 239 263 - -
Pte5g01334 263 Pfam AP2 domain 94 142 IPR001471 GO:0003700|GO:0006355
Pte5g01334 263 MobiDBLite consensus disorder prediction 40 78 - -
Pte5g01334 263 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700|GO:0006355
Pte5g01334 263 CDD AP2 94 152 IPR001471 GO:0003700|GO:0006355
Pte5g01334 263 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
Pte5g01334 263 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Pte5g01334 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 72 241 - -
Pte5g01334 263 SUPERFAMILY DNA-binding domain 95 152 IPR016177 GO:0003677
Pte5g01334 263 SMART rav1_2 94 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01334 Pte-Chr5 35403187 35403978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01334 78 264 AP2-EREBP Transcription Factor Family AT5G52020 56.085 1.42e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte5g01334 AP2 3.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01334 - - qsa:O6P43_005538 205.682