Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01333 ATGCATTCTTTAGCTCATTCCTCAGACCCTTACCCAATTGGATCAGAAATTCTCTCTTCTGACATGGCTGCTTCGGGGTCACCGCTTTCTGATTGTAGTAGTGCTTCTCTTCCTGCTAATTTATCCGATGAAGATGTAATGCTGGCTGCCAGGCACCCCAAAAAGCGAGCTGGCAGGAAAAAATTCAAGGAGACACGGCATCCGGTGTATAGAGGAGTAAGGAGAAGGAACTCAGGAAAGTGGGTGTGTGAAGTTAGAGAACCCAATAAGAAGACAAGGATTTGGCTGGGAACTTTTCCGACTGCTGATATGGCTGCACGAGCCCATGATGTTGCGGCAATCGCATTGAAGGGTCGATCAGCTTGTTTGAATTTTGCCGACTCTGCATGGAGATTACCGGTTCCTAAGTCGACGGAAGCAAAGGATATCCAGAAGGCTGCTGCTGAAGCAGCGGAGGCGTTCCGGGAGGGAACGGTGGAATTGGAAGTGGATGATTCAAGGAAAAAGAATAGCGAAGCTGCGACAAAGACCGTGGAAGTAAAGGAGCAAAATATGTTCTATATGGATGAAGACGTATTGTTTGGGATGCCGGGGTTGCTGACAAACATGGCGGAAGGGTTGCTGTTGCCACCGCCGCCGACACAAGGAGATGGGAGTGGAACTGGTGATGTGGACATTGAAGAAGCTGAGGTGTCTCTATGGAGTTACTCTTTGTAA 717 0.4868 MHSLAHSSDPYPIGSEILSSDMAASGSPLSDCSSASLPANLSDEDVMLAARHPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTADMAARAHDVAAIALKGRSACLNFADSAWRLPVPKSTEAKDIQKAAAEAAEAFREGTVELEVDDSRKKNSEAATKTVEVKEQNMFYMDEDVLFGMPGLLTNMAEGLLLPPPPTQGDGSGTGDVDIEEAEVSLWSYSL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01333 238 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Pte5g01333 238 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Pte5g01333 238 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Pte5g01333 238 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Pte5g01333 238 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Pte5g01333 238 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Pte5g01333 238 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Pte5g01333 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 30 236 IPR045277 GO:0003700
Pte5g01333 238 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Pte5g01333 238 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01333 Pte-Chr5 35397660 35398652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01333 48 236 AP2-EREBP Transcription Factor Family AT4G25470 62.500 2.85e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte5g01333 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01333 - - qsa:O6P43_008272 281.567