Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01324 ATGGATCTCGATGGAAGCAATAAACGAGTATTCCATCGGTTAGGTGGACCTACAGCAGATAATAGATCACAGAAGGTGTGTTATCATTGGCGAGCAGGCAAGTGCAATAGGCATCCATGTCCGTTCTTACACAAAGAATTGCCTTCTTCAGTGTTGGAAACAGCTAATGGGATGAATTCAAAGCGGCCACATGGGTTTGCTGATGATTCAGTTTATCCTAGAAGAAGTCCAAATTTTAGTGGATCTTCTACTTGGGGTCGTGTTCACGGTGGTAACGGTGTAGCTGGTGGGAATAAAATTGTTAGGACTGAGAAAGTTTGCAACTATTGGTCGCAAGGGAATTGTAGTTATGGGGAGAGATGTAAATTCTTGCATTCTTGGAGTACAGGTGACGGCTTTTCATCACTTACACAGCTTGAGGGGCATCAAAAGGTCGTAACTGCAATTGCTCTGCCATCTGGGTCGGATAAGCTGTATACTGGAAGTAAAGATGAGACTGTCAGAGTCTGGGGCTGCCAATCCGGACAGTGCATGGGTGTGATTAATCTTGGAGGTGAAGTTGGTTGCATGATCAGTGAAGGTCCTTGGGTCTTTGTCGGTATGCCAAACCTTGTTAAGGCATGGAATATACAAACTTCTAGTGAAATGAGTCTCAATGGCCCTGTGGGGCAAGTCTATGCTTTGGTTGTTGGTAACGATTTGCTCTTCGCAGGGACACAGGAGGGCACTATATTAGCATGGAAGTTTAATGTGGTTACCAACTGCTTTGAGCCAGCTGCATCGCTTACAGGTCATTCGCTTGGAGTTATTTCATTAATTACTGGAGCTAATAAGCTTTACTCAGGTTCAATGGACCATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGTATGCAGACATTGGCAGAGCATACTTCGGTTGTTATGTCTCTTCTTTGCTGGGACCAATTTCTCTTATCTTGTTCTTTGGATAAAACCATAAAGGTATGGGTTGCTACTGAAAGTGGAAACTTCGAAGTGACATACACTCATACTGAAGAGCATGGCCTGCTTGCCCTCAGTGGAATGCATGATTCACAATCTAAACCCATCTTGCTGTGCTCCTGCAATGATAACTCTGTACGCCTATATGATTTGCCATCATTTTCTGAGAGGGGTAAGATTTTTTCCAAAAAAGAGATCCGAGCAATTCAGGTAGGTCCAGGGGGCCTGTTTTTCACTGGTGACGGAACAGGTCAAGTAAAAGTATGGCAATGGGCAACTGAACCAGCTACTGCTGTCAAATAA 1290 0.4395 MDLDGSNKRVFHRLGGPTADNRSQKVCYHWRAGKCNRHPCPFLHKELPSSVLETANGMNSKRPHGFADDSVYPRRSPNFSGSSTWGRVHGGNGVAGGNKIVRTEKVCNYWSQGNCSYGERCKFLHSWSTGDGFSSLTQLEGHQKVVTAIALPSGSDKLYTGSKDETVRVWGCQSGQCMGVINLGGEVGCMISEGPWVFVGMPNLVKAWNIQTSSEMSLNGPVGQVYALVVGNDLLFAGTQEGTILAWKFNVVTNCFEPAASLTGHSLGVISLITGANKLYSGSMDHTIRVWNLETLQCMQTLAEHTSVVMSLLCWDQFLLSCSLDKTIKVWVATESGNFEVTYTHTEEHGLLALSGMHDSQSKPILLCSCNDNSVRLYDLPSFSERGKIFSKKEIRAIQVGPGGLFFTGDGTGQVKVWQWATEPATAVK* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01324 429 Gene3D - 5 59 - -
Pte5g01324 429 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Pte5g01324 429 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Pte5g01324 429 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Pte5g01324 429 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Pte5g01324 429 Pfam WD domain, G-beta repeat 297 331 IPR001680 GO:0005515
Pte5g01324 429 Pfam WD domain, G-beta repeat 136 170 IPR001680 GO:0005515
Pte5g01324 429 SUPERFAMILY WD40 repeat-like 135 422 IPR036322 GO:0005515
Pte5g01324 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 180 IPR001680 GO:0005515
Pte5g01324 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 301 IPR001680 GO:0005515
Pte5g01324 429 Gene3D - 121 229 IPR015943 GO:0005515
Pte5g01324 429 SUPERFAMILY CCCH zinc finger 102 126 IPR036855 GO:0046872
Pte5g01324 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 139 170 - -
Pte5g01324 429 FunFam Zinc finger CCCH domain-containing protein 48 219 427 - -
Pte5g01324 429 FunFam Zinc finger CCCH domain-containing protein 48 127 217 - -
Pte5g01324 429 PANTHER - 60 425 IPR044715 -
Pte5g01324 429 SMART WD40_4 211 248 IPR001680 GO:0005515
Pte5g01324 429 SMART WD40_4 336 379 IPR001680 GO:0005515
Pte5g01324 429 SMART WD40_4 132 171 IPR001680 GO:0005515
Pte5g01324 429 SMART WD40_4 295 332 IPR001680 GO:0005515
Pte5g01324 429 SMART WD40_4 382 419 IPR001680 GO:0005515
Pte5g01324 429 SMART WD40_4 255 292 IPR001680 GO:0005515
Pte5g01324 429 ProSiteProfiles Zinc finger C3H1-type profile. 102 128 IPR000571 GO:0046872
Pte5g01324 429 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Pte5g01324 429 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Pte5g01324 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Pte5g01324 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 105 126 IPR000571 GO:0046872
Pte5g01324 429 SMART c3hfinal6 103 127 IPR000571 GO:0046872
Pte5g01324 429 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Pte5g01324 429 Gene3D - 230 428 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01324 Pte-Chr5 35326746 35330418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01324 138 331 Acyl Lipid Metabolism Gene Families AT3G18860 25.714 6.63e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte5g01324 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01324 - - qsa:O6P43_008277 734.947