Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01313 ATGGTGAGGGGGAAGATTCAGATGAAGAAAATCGAGAACGCAACAAATAGACAAGTGACCTTTTCAAAGCGTCGAAATGGACTTCTGAAGAAAGCCTACGAGCTTTCAGTGCTTTGTGACGCTGAAGTAGCTGTCATCGTTTTCTCACAGACAGGAAGGCTCTACGAATTCTCTAGTTCTAATATGCAGAAGACAATTGAGAGATACCATAAATACACAAGAGATGTCCAGACTACCAAGGTTGCAAATGAAAAGCACATGCAGGAAGCTTTTAGGGCATGGATTGCAAAACTGTTCTTATGA 303 0.4158 MVRGKIQMKKIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIVFSQTGRLYEFSSSNMQKTIERYHKYTRDVQTTKVANEKHMQEAFRAWIAKLFL* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01313 100 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte5g01313 100 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte5g01313 100 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte5g01313 100 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte5g01313 100 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Pte5g01313 100 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 85 - -
Pte5g01313 100 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pte5g01313 100 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Pte5g01313 100 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte5g01313 100 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte5g01313 100 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Pte5g01313 100 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01313 Pte-Chr5 35215534 35221318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01313 1 89 MADS-box Gene Family AT5G62165 75.281 7.59e-47 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte5g01313 SRF-TF 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01313 - - zju:125421449 142.895