Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01307 ATGCAAATGGTTCAACCACCTGATTTGTCAAAGGAGGAACGAGTGACAAAAGAGGTAGCTCTTGTGAAGTCAAATGTCAGTAATAAGATAAGACAGAGAACAAAGATACCCAAAACTCCTAAAGAAAAGAAGCTGAAGGAAGGTCTTTATCGTACAAAGGATGATAAGACATTAGCCATTAAGCAAGCAAGATCGGCAAAGAAGACTGCTAAAGTCACAATAAACGGGATTGAGTTGGACATCTCAAGTATCCCTATTCCAGTTTGCTCGTGCACTGGAACACCGGAACAATGCTACCATTGGGGCTCTGGTGGGTGGCAATCTGCATGTTGTACAACAATGATATCGATGCACTGA 357 0.4202 MQMVQPPDLSKEERVTKEVALVKSNVSNKIRQRTKIPKTPKEKKLKEGLYRTKDDKTLAIKQARSAKKTAKVTINGIELDISSIPIPVCSCTGTPEQCYHWGSGGWQSACCTTMISMH* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01307 118 Pfam GAGA binding protein-like family 5 118 IPR010409 -
Pte5g01307 118 SMART GAGA_bind_2 1 118 IPR010409 -
Pte5g01307 118 PANTHER - 2 118 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01307 Pte-Chr5 35149310 35149666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01307 29 118 BBR or BPC Transcription factor family AT2G01930 47.312 4.02e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pte5g01307 GAGA_bind 7.4e-36 No_clan