Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01299 ATGTTTCCTTTACAACCTGGCAAGGAGCTGGTTGTCCAGTTCTCCTCAACCCCGCCAAAGCAAGAGGACCCAATCTTGGAAGATTTGATTTTGGATAGCCATAATTATTGTCTGGATGCCGGTAAGAGTTCCATTCCTAAGAATTTCGTCAGCAAAAGGCAGTGGACGCATCATGGCTATGATGAGAGCTACAATGGTTCAAAAGATCGAAAGAAAATAATACACAGGGACATTGAAAGGCAAAGAAGGCACGAAATGTCTAGCCTCTATACTTCACTTAGAGCTCTTCTCCCTTATGAGTTCATCAAGGGAAAGCGTTCGATATCAGATCATGTGAATGAGACAGTGAACTACGTCAAGCACTTGCAGCAGAAAATCAAAGAACTAAATGGCAAGAGAGATGAACTGAAGAAAGAGTCCAACTTGAGACGTGAAGAGAACTTTAACTGCACTTCAAGTAGCTCATTTGTGATTCAAGAAATATGTGGGAGGGCAAAAACTGAAATCACTCATGGGTTTATAGAGAATGGTTTACCCCTTTCGAAAGTACTAGGAGTCTTGCTTGAACAAGGACTTGATGTTGTTAGCTGTGTTTCCGCAATAGTGAATGGCAGATCACTACATACTATCCAGTATGAGGCTGTAAATTCCACGAGTATAGACCCTTCCATGCTGAAAGGCGAACTAATTAAGAGAGAAGCTTCTTCATCTGGCAATGTTTCTGAGTGA 729 0.417 MFPLQPGKELVVQFSSTPPKQEDPILEDLILDSHNYCLDAGKSSIPKNFVSKRQWTHHGYDESYNGSKDRKKIIHRDIERQRRHEMSSLYTSLRALLPYEFIKGKRSISDHVNETVNYVKHLQQKIKELNGKRDELKKESNLRREENFNCTSSSSFVIQEICGRAKTEITHGFIENGLPLSKVLGVLLEQGLDVVSCVSAIVNGRSLHTIQYEAVNSTSIDPSMLKGELIKREASSSGNVSE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01299 242 FunFam Transcription factor bHLH126 62 149 - -
Pte5g01299 242 SMART finulus 76 128 IPR011598 GO:0046983
Pte5g01299 242 CDD bHLH_AtORG2_like 71 147 - -
Pte5g01299 242 Pfam Helix-loop-helix DNA-binding domain 72 123 IPR011598 GO:0046983
Pte5g01299 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 68 229 - -
Pte5g01299 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 140 IPR036638 GO:0046983
Pte5g01299 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Pte5g01299 242 Gene3D - 62 152 IPR036638 GO:0046983
Pte5g01299 242 Coils Coil 119 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01299 Pte-Chr5 35061858 35063327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01299 69 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 44.253 2.57e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte5g01299 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01299 - - gmx:100780888 189.119