Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01289 ATGGGAAGGGGTAGAGTTGTATTGGAGAGGATAGAGAACAAGATTAACAGGCAGGTAACGTTCTCCAAGCGCAGGAATGGTCTGCTAAAGAAAGCCTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCTCTTATCATGTTCTCCAGCCGTGGAAAGCTTTCCCAGTTTTCTAGCAACGACATTGACAAAACCCTTGAACGATATCGGAGAAGCAGTTATACCTCAAATGGCATATTTGAACATGAAGAGACTCTGTACGAGGAGATTTTGAAATTAAGAGGCAACTGCGAATCTCTTCAGCGTTCTCAAAAGCATTTTCTGGGTGAAGATATTGAACAGCTTAAAATGAAAGAGCTGCAACATCTTGAGGAACTAATCGACAGAACACTCTCACAAACTAGGCAACGCAAGACATCAATGATGTTGGAGAAAATTGAAGAACTGCGAAGAAAGGAGCAATACCTTGCAGAGGTCAACGAAGAGCTCACATCTAAGCTTGCTTATGGGAATCAACGTGGGATAATTGACTCTGCAGAAGATGGGGGCAATCAATCTGAGGGTAGATACTCTCAGAGAAAACCTTGTGGAATCTCAAACTACGTTCAAATTTGGGGGAATTAA 624 0.4263 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIMFSSRGKLSQFSSNDIDKTLERYRRSSYTSNGIFEHEETLYEEILKLRGNCESLQRSQKHFLGEDIEQLKMKELQHLEELIDRTLSQTRQRKTSMMLEKIEELRRKEQYLAEVNEELTSKLAYGNQRGIIDSAEDGGNQSEGRYSQRKPCGISNYVQIWGN* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01289 207 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pte5g01289 207 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Pte5g01289 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte5g01289 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Pte5g01289 207 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte5g01289 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 Coils Coil 142 166 - -
Pte5g01289 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte5g01289 207 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte5g01289 207 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01289 Pte-Chr5 34918092 34965383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01289 1 167 MADS-box Gene Family AT2G45650 56.471 1.17e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte5g01289 K-box 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01289 K09264 - qsu:112034717 234.572