Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01284 ATGTGGTACCTCCTGCCTAAACAAACCATTTCAGCACCGGCCTATAAAAAAAATGAAATTGGTACAGATGAAGATATCAAGCAAGGAGAATTTGTAATAGAATATGTTGGAGAAGTTATCGATGACAAAACTTGTGAGGAAAGGCTTTGGGCAATGAAACATCGTGGCGAGACAAACTTTTATCTATGTGAAGTCAGTCGAGATATGGTGATTGATGCAACTTACAAGGGAAACAAATCAAGATATGTTAATCACAGTTGCTGTCCCAATACTGAGATGCAGAAATGGATAATTGACGGTGAAACAAGAATTGGCATTTTTGCAACTGGTGACATAAAAAAGGGAGAGCACCTGACTTATGATTATCAGTTTGTGCAATTTGGTGCTGATCAAGATTGCCATTGTGGTGCTGTTGGTTGCAGGCGTAAGCTAGGTGCCAAACCTAACAAGCCAAAGTTATATCAGAAAGGCAAACAGCTGGAAGGAGGAGGTTCTGGTGTCCAAAACCAAAAAAAATGCACACGCAATTGCATTGGTGAAGTTATCGAAATCAATCGTCCCATGGATGGGAGGTCTTATGCAATTATTAAAAGGTTTGATAAACGCTCCAAAAAGCACACGGTAAGGAAAACCTTTTTGTTTCTTGTGCATAAATTAGGAGTTTTAGCACGTTTAAGATACATGTTTTTGCTATTATAG 699 0.3877 MWYLLPKQTISAPAYKKNEIGTDEDIKQGEFVIEYVGEVIDDKTCEERLWAMKHRGETNFYLCEVSRDMVIDATYKGNKSRYVNHSCCPNTEMQKWIIDGETRIGIFATGDIKKGEHLTYDYQFVQFGADQDCHCGAVGCRRKLGAKPNKPKLYQKGKQLEGGGSGVQNQKKCTRNCIGEVIEINRPMDGRSYAIIKRFDKRSKKHTVRKTFLFLVHKLGVLARLRYMFLLL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01284 232 Gene3D SET domain 17 162 IPR046341 -
Pte5g01284 232 Pfam SET domain 22 122 IPR001214 GO:0005515
Pte5g01284 232 CDD SET_ASHR3-like 22 145 - -
Pte5g01284 232 ProSiteProfiles Post-SET domain profile. 129 145 IPR003616 -
Pte5g01284 232 ProSiteProfiles SET domain profile. 6 123 IPR001214 GO:0005515
Pte5g01284 232 PANTHER SET DOMAIN PROTEINS 22 174 - -
Pte5g01284 232 SUPERFAMILY SET domain 22 141 IPR046341 -
Pte5g01284 232 SMART set_7 7 129 IPR001214 GO:0005515
Pte5g01284 232 SMART PostSET_3 129 145 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01284 Pte-Chr5 34887540 34891613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01284 24 141 C2H2 Transcription Factor Family AT2G23740 34.783 5.07e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte5g01284 SET 7.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01284 - - jre:109005024 315.079