Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01283 ATGGTAGTGAGTGGAGGAGGTCAGCCTCTGAAGCGAATGAAGCGAAGAGTTACAGCTGATCTCTATGACTTCCTTACTTTTCCTTCTTCGTCGCTTGTCTATGCGGATTTCTACGGCGGAGGTGGAGGGTCGTTTCGGACGAACGTGCGTTCATTTCTGACAAGGCACGCGCTGTTACCACCACCGTCGGCTTTGTTTCCTCACCTGTTAACTTGGCAGATCCAGTTTCGTGTAGGGGATTTAACGGACGGTTCGGATGCCAACAACCCGGCGTTAGTTTGCCTTGACGTTGTTGAAGAAGATGTTGCCAGATCCAGATCTGTATACTGCGACCAGTGTCGAGTTGTTGGTTGGAGTGGCCACCCAGTATGTGGAAAGCGTTACCATTTCATCATAAAGGCTGATGGTAGCTCCATTGGTGGGTACCAAAAGCCATGCATGTGCTGTGGGGATATCTTGCACTTGTCCGAATCTAAGTGCAAGTCATGCAATCATGTAACGACTTCAGATGATGTGGAAGACTGGGTCTATCAACAGTTGGAGAATACTACTCATCTTTTACATGGCGTTATCCATGCAAATGGTTATGGACATCTTCTTCGGGTTAATGGAAGAGAAGGAGGCTCTAGGGTTCTGTCTGGTCACCATATCATGGACTTCTGGGACCGACTGTGTAAATTGCTTGGTGCCAGAAAGGTCAGTGTGATGGATGTTTCAAAGAAATTTGGGTTGGAGTACCGCCTGCTTCATGCTGTCATGAAAGGATATCCTTGGTATGGTGACTGGGGGTATGAATTTGGCCCAGGTAGCTATGGTGTAACGATTGATGCATATAAGTCTGCTGTGGAAAACCTCTCCAGTGTACCTTTGTCTATATTGCTCTCTGAGGGACCAAAACTACACCCTCGTTTGCATGAAGTGATTTCTCACTACAAGTCCTTATCTGAGCACGAACTTGTATATATTCGGGACCTTTTTTGTTTTTTGATGGGTCTGGTTCGTGATGCTAACAAAACTTCTTTGAGGTTTAGTGATGTCACTTGCAAGAAGCAGCGAACTGCATCACTGCTTTGTTCATGGACTAAGAATGATATTGAACGTGTGGAGCAAGCTATCTTCAGGGTGCTGCGTGCAGTTTCCGTTCCTACTTGGGTAAGCGGGCGTGCCCTCAAAGGTGTGGCCTGCAAGGTTGGTTCTCCAGAGCTCCTGGATTACTGCCTCTCAGAACTCGGAGGAAAAGTGGTTAACAATGGGAAGGTTGTTAATGTCAGACTGAATCCGGGATCTGGTGCTGCGGAATACAGACTTCAGGAAGGAAACAATTCTTCCAATAAAATTACCACTGTCATCAATCCACCTCCCAAGGAGGTCATATTACAGGACTTGAGATATTTATATGAATCCTTGCTTCATCCTCAAACCCAGCTAACCTATGCTTATGAAGGTCTAAGAGATGTTGCTTCCAACTCAGCTGAGAAACTTCTCGACTGCAAGCAGTTCGTGAAAGATTACAGGCCCGAAAAGGTGATGGCCATGTCAAACGCGAATGCCATATACGTGTCATGTGAAGTAGAACTCACGGATGAATCTGAAGCATATGCCACCAACCCACCTCCAGAATTGATTGTCTTGCCCTTAAATGCTACACTGTCTGATTTTAAGATTGAAGTAACAAAGGCTTTTCATGATGTATATCTGATGTTTCGAAGATTTCAAGTAGATGAGCTGCCAGACTTTAGTGGTGTAGATGATTCCACCCAGGTCAAGATAGTATTAGGATCTAGGGAAGTTGTTCGAGTACGAGGCAGGTTGCTGGGGAAGAACGGGTTGAGCAGGTTCCGAATGGAGCGCGGTGTTGAGCGATGGACGGTGGACTGTAGTTGTGGAGCCAAGGATGACGATGGTGAGAGAATGCTGGCGTGTGATGTTTGTGGTGTGTGGCGGCACACCAGGTGTTCTGGAATATGTGATGCAGATCCTGTCCCTGCGAGGTTTGTTTGCCCAAGATGTCGGAGCTCAGACATGACTTGTAAACCCAATGGGCACTGCAAGGATGAGACGATGACTGAGATGCTACTTGGAGAAGGGTTTGCCAATGCCTCCTAA 2106 0.4682 MVVSGGGQPLKRMKRRVTADLYDFLTFPSSSLVYADFYGGGGGSFRTNVRSFLTRHALLPPPSALFPHLLTWQIQFRVGDLTDGSDANNPALVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYQKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYQQLENTTHLLHGVIHANGYGHLLRVNGREGGSRVLSGHHIMDFWDRLCKLLGARKVSVMDVSKKFGLEYRLLHAVMKGYPWYGDWGYEFGPGSYGVTIDAYKSAVENLSSVPLSILLSEGPKLHPRLHEVISHYKSLSEHELVYIRDLFCFLMGLVRDANKTSLRFSDVTCKKQRTASLLCSWTKNDIERVEQAIFRVLRAVSVPTWVSGRALKGVACKVGSPELLDYCLSELGGKVVNNGKVVNVRLNPGSGAAEYRLQEGNNSSNKITTVINPPPKEVILQDLRYLYESLLHPQTQLTYAYEGLRDVASNSAEKLLDCKQFVKDYRPEKVMAMSNANAIYVSCEVELTDESEAYATNPPPELIVLPLNATLSDFKIEVTKAFHDVYLMFRRFQVDELPDFSGVDDSTQVKIVLGSREVVRVRGRLLGKNGLSRFRMERGVERWTVDCSCGAKDDDGERMLACDVCGVWRHTRCSGICDADPVPARFVCPRCRSSDMTCKPNGHCKDETMTEMLLGEGFANAS* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01283 701 SUPERFAMILY FYVE/PHD zinc finger 615 673 IPR011011 -
Pte5g01283 701 CDD PHD_MMD1_like 625 670 - -
Pte5g01283 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 685 - -
Pte5g01283 701 Pfam PHD-finger 626 672 IPR019787 -
Pte5g01283 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 677 IPR013083 -
Pte5g01283 701 SMART PHD_3 625 671 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01283 Pte-Chr5 34876769 34882113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01283 89 670 PHD Transcription Factor Family AT5G22260 30.757 9.56e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte5g01283 PHD 1.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01283 K26271 - qsa:O6P43_008318 1030.01